View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13187_low_26 (Length: 267)

Name: NF13187_low_26
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13187_low_26
NF13187_low_26
[»] chr7 (1 HSPs)
chr7 (1-105)||(12025959-12026064)
[»] scaffold0504 (1 HSPs)
scaffold0504 (1-96)||(8453-8548)
[»] chr3 (1 HSPs)
chr3 (135-249)||(5970193-5970307)
[»] chr8 (1 HSPs)
chr8 (135-241)||(17230745-17230851)
[»] chr1 (2 HSPs)
chr1 (47-96)||(18189946-18189995)
chr1 (148-241)||(19851074-19851167)
[»] chr2 (3 HSPs)
chr2 (135-241)||(28049555-28049661)
chr2 (185-241)||(28050703-28050759)
chr2 (185-241)||(27971219-27971275)
[»] chr4 (1 HSPs)
chr4 (187-241)||(808277-808331)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 12026064 - 12025959
Alignment:
Q  1 atagcattattatgttttgttgttattatttatcaagatgcctcttagatgcttcaactgaaaatgaagtttgtgtcgtattctgtaagtga-aaaactt 99  Q
    ||||||||||||| | ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  12026064 atagcattattatttgttgttgttattatttattaagatgcttcttagatgcttgaactgaaaatgaagtttgtgtcatattctgtaagtgaaaaaactt 12025965  T
Q  100 cattat 105  Q
    ||||||    
T  12025964 cattat 12025959  T

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Target: scaffold0504 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8453 - 8548
Alignment:
Q  1 atagcattattatgttttgttgttattatttatcaagatgcctcttagatgcttcaactgaaaatgaagtttgtgtcgtattctgtaagtgaaaaa 96  Q
    ||||||||||| | ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8453 atagcattattgttttttgttgttattatttattaagatgcttctttgatgcttcaactgaaaatgaagtttgtgtcatattctgtaagtgaaaaa 8548  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 5970307 - 5970193
Alignment:
Q  135 taaactcatgacctctttacaggtcaagcaaagggttcaaacatcaataaatttttggaataaatgaaaagaatatggctctgcaatgtctttaacagaa 234  Q
    |||||||| | | ||||||||| ||||||||| ||||||||  ||| |  ||||| | ||  ||||||||||| |||| |||||||||||| ||||||||    
T  5970307 taaactcaggtcatctttacagatcaagcaaatggttcaaatttcagtgtattttcgaaagcaatgaaaagaaaatggttctgcaatgtctctaacagaa 5970208  T
Q  235 ctgggtagatagttg 249  Q
    |||||||||||||||    
T  5970207 ctgggtagatagttg 5970193  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 17230745 - 17230851
Alignment:
Q  135 taaactcatgacctctttacaggtcaagcaaagggttcaaacatcaataaatttttggaataaatgaaaagaatatggctctgcaatgtctttaacagaa 234  Q
    |||||||| | | ||||||||||||||| ||| |||| |||| | | |  ||||||| ||| ||| |||||||||||| |||||||||||| ||||||||    
T  17230745 taaactcaggtcatctttacaggtcaagtaaatggttaaaacttgagtgtatttttgaaatcaattaaaagaatatggttctgcaatgtctctaacagaa 17230844  T
Q  235 ctgggta 241  Q
    |||||||    
T  17230845 ctgggta 17230851  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 18189946 - 18189995
Alignment:
Q  47 agatgcttcaactgaaaatgaagtttgtgtcgtattctgtaagtgaaaaa 96  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  18189946 agatgcttcaactgaaaatgaagtttgtgttgtattctgtaagtaaaaaa 18189995  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 19851074 - 19851167
Alignment:
Q  148 tctttacaggtcaagcaaagggttcaaacatcaataaatttttggaataaatgaaaagaatatggctctgcaatgtctttaacagaactgggta 241  Q
    |||||||| |||||| ||| |||| |||| | | |  ||||||| ||| ||| |||||||||||| |||||||||||| |||||||||||||||    
T  19851074 tctttacaagtcaagtaaatggttaaaacttgagtttatttttgaaatcaattaaaagaatatggttctgcaatgtctctaacagaactgggta 19851167  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 28049555 - 28049661
Alignment:
Q  135 taaactcatgacctctttacaggtcaagcaaagggttcaaacatcaataaatttttggaataaatgaaaagaatatggctctgcaatgtctttaacagaa 234  Q
    |||||||| | | ||||||||||||||| ||| | || |||| | | |  ||||||| ||| ||| |||||||||||| |||||||||||| ||||||||    
T  28049555 taaactcaggtcatctttacaggtcaagtaaatgattaaaacttgagtgtatttttgaaatcaattaaaagaatatggttctgcaatgtctctaacagaa 28049654  T
Q  235 ctgggta 241  Q
    |||||||    
T  28049655 ctgggta 28049661  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 28050703 - 28050759
Alignment:
Q  185 atttttggaataaatgaaaagaatatggctctgcaatgtctttaacagaactgggta 241  Q
    ||||||| ||| ||| |||||||||||| |||||||||||| ||||||||| |||||    
T  28050703 atttttgaaatcaattaaaagaatatggttctgcaatgtctctaacagaaccgggta 28050759  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 27971219 - 27971275
Alignment:
Q  185 atttttggaataaatgaaaagaatatggctctgcaatgtctttaacagaactgggta 241  Q
    ||||||| ||| ||| |||||||||||| |||||||||||| ||| ||||| |||||    
T  27971219 atttttgaaatcaattaaaagaatatggttctgcaatgtctctaatagaaccgggta 27971275  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 808331 - 808277
Alignment:
Q  187 ttttggaataaatgaaaagaatatggctctgcaatgtctttaacagaactgggta 241  Q
    ||||| ||| ||| |||||||||||| |||||||||||| ||||||||| |||||    
T  808331 ttttgaaatcaattaaaagaatatggttctgcaatgtctctaacagaaccgggta 808277  T

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