View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13187_low_3 (Length: 609)

Name: NF13187_low_3
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13187_low_3
NF13187_low_3
[»] chr7 (3 HSPs)
chr7 (263-580)||(28470076-28470394)
chr7 (328-503)||(5229937-5230112)
chr7 (18-81)||(28470576-28470639)
[»] chr8 (5 HSPs)
chr8 (322-504)||(12811915-12812097)
chr8 (353-503)||(34830908-34831058)
chr8 (352-447)||(12772269-12772364)
chr8 (352-447)||(12791129-12791224)
chr8 (428-476)||(27527556-27527604)
[»] chr2 (3 HSPs)
chr2 (374-504)||(30642895-30643024)
chr2 (362-447)||(5546362-5546447)
chr2 (404-449)||(2115269-2115314)
[»] chr5 (1 HSPs)
chr5 (341-499)||(20543499-20543657)
[»] chr6 (1 HSPs)
chr6 (336-449)||(22611520-22611633)
[»] chr4 (2 HSPs)
chr4 (353-502)||(45671368-45671517)
chr4 (374-447)||(42506647-42506720)
[»] chr3 (1 HSPs)
chr3 (365-476)||(38396710-38396821)
[»] chr1 (1 HSPs)
chr1 (336-435)||(46039592-46039691)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 263 - 580
Target Start/End: Complemental strand, 28470394 - 28470076
Alignment:
Q  263 ggtgagattttttaatattagatgaatgaaaaagagagagaagggtaccctgaagttgaacttgcaaattcagaaagctttccacgacttgagaaaatga 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470394 ggtgagattttttaatattagatgaatgaaaaagagagagaagggtaccctgaagttgaacttgcaaattcagaaagctttccacgacttgagaaaatga 28470295  T
Q  363 taagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgtt 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470294 taagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgtt 28470195  T
Q  463 ttctatcctcttcagttcaaccctccctctacccattttttcttatcactctctcttctgctatgagtctag-nnnnnnnncagtaactgatcagaaagt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  28470194 ttctatcctcttcagttcaaccctccctctacccattttttcttatcactctctcttctgctatgagtctagaaaaaaaaacagtaactgatcagaaagt 28470095  T
Q  562 ttgtatttatattcgaaat 580  Q
    |||||||||||||||||||    
T  28470094 ttgtatttatattcgaaat 28470076  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 328 - 503
Target Start/End: Complemental strand, 5230112 - 5229937
Alignment:
Q  328 aaattcagaaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttctt 427  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||| |||||||||||| ||||| || |||||||| ||||| || || | ||||||||||    
T  5230112 aaattcataaagctttccacgagtggagaagatgataagagcaacctcagcatcacaaagaacagaaagttcataagctttcttaagaagaccatttctt 5230013  T
Q  428 ctttttgagaaagtaacttgccggttgattttgttttctatcctcttcagttcaaccctccctctacccatttttt 503  Q
    || || |  || |||||||| | ||| || ||||| |||||||||||||  ||||| || ||||| ||||||||||    
T  5230012 ctcttagcaaatgtaacttgtctgtttatcttgttctctatcctcttcaactcaactcttcctcttcccatttttt 5229937  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 28470639 - 28470576
Alignment:
Q  18 aaaaggggtgtgtgaaaagtaaaatcttaaatagttcaaatgcagaaaccagtgaccattttgg 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470639 aaaaggggtgtgtgaaaagtaaaatcttaaatagttcaaatgcagaaaccagtgaccattttgg 28470576  T

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Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 322 - 504
Target Start/End: Original strand, 12811915 - 12812097
Alignment:
Q  322 acttgcaaattcagaaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaacca 421  Q
    |||| |||||||| | || || ||||| || |||||||||||||| ||||  ||||||||||| ||||| || |||||||| ||||| || |||||||||    
T  12811915 acttccaaattcatagagtttgccacggctagagaaaatgataagggcaacttcagcatcacagagaacagacagttcataagctttcttgagcaaacca 12812014  T
Q  422 tttcttctttttgagaaagtaacttgccggttgattttgttttctatcctcttcagttcaaccctccctctacccattttttc 504  Q
    |||||||||||||||||||| || |||||||| |||||||| ||||| ||||||| |||||| || ||||| |||||||||||    
T  12812015 tttcttctttttgagaaagttacctgccggtttattttgttctctattctcttcaattcaactcttcctcttcccattttttc 12812097  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 353 - 503
Target Start/End: Original strand, 34830908 - 34831058
Alignment:
Q  353 gagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggt 452  Q
    ||||| |||||||||||||  ||||||||||| ||||| || |||||||| ||||||||||  | ||| || |||| ||| | ||| |||||||| | ||    
T  34830908 gagaagatgataagagcaacttcagcatcacaaagaacagaaagttcataagcttttttcaaaagaccgttccttcgtttagcgaaggtaacttgtctgt 34831007  T
Q  453 tgattttgttttctatcctcttcagttcaaccctccctctacccatttttt 503  Q
    |||||||||| || || |||||||  ||||| || ||||| ||||||||||    
T  34831008 tgattttgttctcaattctcttcaactcaactcttcctcttcccatttttt 34831058  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 447
Target Start/End: Complemental strand, 12772364 - 12772269
Alignment:
Q  352 tgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 447  Q
    ||||||||  |||||||||| ||||||||||||||  ||||| |||||| |||| || |||| ||||||||||||||| |||||||| || |||||    
T  12772364 tgagaaaacaataagagcaacctcagcatcacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttg 12772269  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 352 - 447
Target Start/End: Complemental strand, 12791224 - 12791129
Alignment:
Q  352 tgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 447  Q
    ||||||||  |||||||||| ||||||||||||||  ||||| |||||| |||| || |||| ||||||||||||||| |||||||| || |||||    
T  12791224 tgagaaaacaataagagcaacctcagcatcacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttg 12791129  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 476
Target Start/End: Original strand, 27527556 - 27527604
Alignment:
Q  428 ctttttgagaaagtaacttgccggttgattttgttttctatcctcttca 476  Q
    ||||| ||||||||||| || || ||||| |||||||||||||||||||    
T  27527556 cttttagagaaagtaacctgacgattgatcttgttttctatcctcttca 27527604  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 374 - 504
Target Start/End: Original strand, 30642895 - 30643024
Alignment:
Q  374 tcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgttttctatcctct 473  Q
    |||||||||||  |||| || |||||||| |||||||| ||||||||||||||||| |||||||||||  ||||| |||| |||||||| ||||| ||||    
T  30642895 tcagcatcacag-gaacagacagttcataagcttttttgagcaaaccatttcttctctttgagaaagttgcttgctggtttattttgttctctattctct 30642993  T
Q  474 tcagttcaaccctccctctacccattttttc 504  Q
    ||| |||||| || ||||| |||||||||||    
T  30642994 tcaattcaactcttcctcttcccattttttc 30643024  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 447
Target Start/End: Complemental strand, 5546447 - 5546362
Alignment:
Q  362 ataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 447  Q
    ||||||||||  || |||||||| ||||| || | |||||| ||||| |||| ||||||||||||||||||  ||||||| |||||    
T  5546447 ataagagcaacttctgcatcacaaagaacagataattcatatgctttcttcaacaaaccatttcttcttttgcagaaagttacttg 5546362  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 449
Target Start/End: Complemental strand, 2115314 - 2115269
Alignment:
Q  404 gcttttttcagcaaaccatttcttctttttgagaaagtaacttgcc 449  Q
    ||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  2115314 gctttcttcaacaatccatttcttctttttgagaaagtcacttgcc 2115269  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 341 - 499
Target Start/End: Original strand, 20543499 - 20543657
Alignment:
Q  341 tttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaag 440  Q
    |||||||| || |||||||| || ||||||| |||||||||||| || |  ||||||||||| || || |||||||  ||||||||||| ||||  || |    
T  20543499 tttccacggctagagaaaataatgagagcaacctcagcatcacaaaggagagagagttcataagccttcttcagcattccatttcttctctttgcaaatg 20543598  T
Q  441 taacttgccggttgattttgttttctatcctcttcagttcaaccctccctctacccatt 499  Q
    ||||||| || || |||||||| || |||||||| || || ||| | || |||||||||    
T  20543599 taacttgacgatttattttgttctcaatcctctttagctctacctttcccctacccatt 20543657  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 449
Target Start/End: Complemental strand, 22611633 - 22611520
Alignment:
Q  336 aaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttga 435  Q
    ||||||| ||||| ||||| ||||||||||| ||||  |||||||||||||||||  | || ||| ||||||| |||| ||| ||| ||||||| |||||    
T  22611633 aaagcttgccacggcttgaaaaaatgataagtgcaacttcagcatcacatagaacacaaagctcaaaggctttcttcaacaatccacttcttctctttga 22611534  T
Q  436 gaaagtaacttgcc 449  Q
    ||| || |||||||    
T  22611533 gaatgttacttgcc 22611520  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 502
Target Start/End: Complemental strand, 45671517 - 45671368
Alignment:
Q  353 gagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggt 452  Q
    ||||| |||||||||||||  ||||||||||| |||||||| |||||||| || || || || | |||||||||||| || |  || || ||||| |  |    
T  45671517 gagaagatgataagagcaacttcagcatcacaaagaactgaaagttcataagccttcttgagtacaccatttcttctcttagcaaatgtgacttgtctat 45671418  T
Q  453 tgattttgttttctatcctcttcagttcaaccctccctctacccattttt 502  Q
    | | |||||| ||||| ||||| |||||||| |||||||| |||||||||    
T  45671417 taactttgttctctattctctttagttcaactctccctcttcccattttt 45671368  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 374 - 447
Target Start/End: Original strand, 42506647 - 42506720
Alignment:
Q  374 tcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 447  Q
    ||||||||||| || ||||| |||||| |||| ||||| ||||  ||||||||||| ||||||||||| |||||    
T  42506647 tcagcatcacaaagcactgaaagttcaaaggcctttttaagcagtccatttcttctctttgagaaagttacttg 42506720  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 365 - 476
Target Start/End: Complemental strand, 38396821 - 38396710
Alignment:
Q  365 agagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgtttt 464  Q
    ||||||| ||| |||||||| ||||| || |||||||| ||||||||||  | ||||||||||| |||||  || |||||||| | |||||| ||||| |    
T  38396821 agagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtctgttgatcttgttct 38396722  T
Q  465 ctatcctcttca 476  Q
    | || |||||||    
T  38396721 caattctcttca 38396710  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 46039592 - 46039691
Alignment:
Q  336 aaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttga 435  Q
    ||||||| ||| |||| ||||| |||||||||||||  |||||||||||||  || || |||||| | ||||| |||| ||||||| ||||||| |||||    
T  46039592 aaagcttgccaagactggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttga 46039691  T

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