View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_30 (Length: 241)
Name: NF13187_low_30
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27714321 - 27714098
Alignment:
| Q |
1 |
aaaaacacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaaacatgacattg |
100 |
Q |
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| T |
27714321 |
aaaaacacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttatcccacaattgcccatgaattcttgagaaaacatgacattg |
27714222 |
T |
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| Q |
101 |
attttgcatcaagaccagtaagcatggccagtgatatcatctccaatggatacttgacctcagtttttgtaccctttggcgaacagtggaaaaagatgaa |
200 |
Q |
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| T |
27714221 |
attttgcatcaagaccagtaagcatggccagtgatatcatctccaatggatacttgacctcagtttttgtaccctttggcgaacagtggaaaaagatgaa |
27714122 |
T |
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| Q |
201 |
aaacgttgttgctaacaatttgct |
224 |
Q |
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||||| ||||||||||||||||| |
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| T |
27714121 |
gaacgtcgttgctaacaatttgct |
27714098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 27697795 - 27697991
Alignment:
| Q |
4 |
aacacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaaacatgacattgatt |
103 |
Q |
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||||| |||||||||||||| || |||||||||||| |||||||||| ||||||||||| | ||||||| |||||||||||||||||||| ||||| |
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| T |
27697795 |
aacactgaaatagcatgtattcgtctaggaaatgtcaatgttatccctgttacttgtccttccattgcccgcgaattcttgagaaaacatgatgctgatt |
27697894 |
T |
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| Q |
104 |
ttgcatcaagaccagtaagcatggccagtgatatcatctccaatggatacttgacctcagtttttgtaccctttggcgaacagtggaaaaagatgaa |
200 |
Q |
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| T |
27697895 |
ttgcatcaagaccaataaccatggctagtgatatcatttccaatggctacgtgacctcaattcttgtaccctatggcgaacaatggaaaaagatgaa |
27697991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 26408784 - 26408980
Alignment:
| Q |
4 |
aacacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaaacatgacattgatt |
103 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||| |||| || || || ||||| || ||||| | |||| |||||||||||||||| ||||| |
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| T |
26408784 |
aacaccgaaatagcatgtatccgtctaggaaatgtccatattattccggtaacatgtcctaccattgctcgtgaaatcttgagaaaacatgatgctgatt |
26408883 |
T |
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| Q |
104 |
ttgcatcaagaccagtaagcatggccagtgatatcatctccaatggatacttgacctcagtttttgtaccctttggcgaacagtggaaaaagatgaa |
200 |
Q |
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| T |
26408884 |
ttgcatcaagaccaacaaccatggccagtggtataatctccagtggctacttgacctctgctattgcaccctttggcgaacaatggaaaaagatgaa |
26408980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 27727555 - 27727470
Alignment:
| Q |
4 |
aacacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaa |
89 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||| ||||||||||||||| |
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| T |
27727555 |
aacaccgaaatagcgtgtatccgcctaggaaatgtccatgttattcctgttacctgtcccaccattgcccttgaattcttgagaaa |
27727470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 27747155 - 27747018
Alignment:
| Q |
4 |
aacacagaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaaacatgacattgatt |
103 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||| ||||||||||||||| |||| | || |
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| T |
27747155 |
aacactgaagtagcgtgtatccgcctaggaaatgtccatgttattcctgttacctgtcccaccattgcccttgaattcttgagaaagaatgatgctactt |
27747056 |
T |
|
| Q |
104 |
ttgcatcaagaccagtaagcatggccagtgatatcatc |
141 |
Q |
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| T |
27747055 |
ttgcatcaagaccaatatccatgtccactgatatcatc |
27747018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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