View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_6 (Length: 514)
Name: NF13187_low_6
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 142 - 496
Target Start/End: Original strand, 34581613 - 34581963
Alignment:
| Q |
142 |
ggaactatgcttaaaatctacagtagaaacagagttagtgagtgcttaaggggcgtatataaaaatggaaaatcaaaacgaaagtaacaagggaaacgtt |
241 |
Q |
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| T |
34581613 |
ggaactatgcttaaaatctacagtagaaacagagttagtgagtgcttaaggggcgtatataaaaatggaaaatcaaaacgaaagtaacaagggaaacgtt |
34581712 |
T |
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| Q |
242 |
ataatggcaccagttgcaaaggtggcaatggtatctgaaaacagacaatgtgacaacattcatctgcttccgcaaaccaaaccatctccacagctagcta |
341 |
Q |
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| T |
34581713 |
ataatggcaccagttgcaaaggtggcaatggtatcggaaaacagataatgtgacaacatgcatctgcttccgcaaaccaaaccatctccac----agcta |
34581808 |
T |
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| Q |
342 |
gggttggcaccatctactccatgcaaaatattttaatttactcactgagctccggttttatagaccactgcatcacattttgtttccaacttagcgatgt |
441 |
Q |
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| T |
34581809 |
gggttggcaccatctactccatgcaaaatattttaatttactcaccgagctccggttttatagaccactgcatcacattttgtttccaacttagcgatgt |
34581908 |
T |
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| Q |
442 |
gggacattgtgcagtgtcgaatgacgatgactcacgatgagtccaatccttctcg |
496 |
Q |
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| T |
34581909 |
gggacattgtgcagtgtcgaatgacgataactcacgatgagtccaatccttctcg |
34581963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 34581183 - 34581313
Alignment:
| Q |
13 |
aatatggtatgaattatgaaaa-aacatttacttttttatttcaaactgatcggtattcgcacttttattgttattgcatttgttcacaattaacatatt |
111 |
Q |
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| T |
34581183 |
aatatggtatgaattatgaaaaaaacatttacttttttatttcaaactgatcggtattcgcactgttattgttattgcatttgttcacaattaacatatt |
34581282 |
T |
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| Q |
112 |
tcacaaagatatgtcaaaaatactttcttag |
142 |
Q |
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| T |
34581283 |
tcacaaagatatgtcaaaaatactttcttag |
34581313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Original strand, 34585570 - 34585603
Alignment:
| Q |
421 |
ttgtttccaacttagcgatgtgggacattgtgca |
454 |
Q |
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| T |
34585570 |
ttgtttccaacttagcgatgtgggacatggtgca |
34585603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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