View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13187_low_9 (Length: 476)
Name: NF13187_low_9
Description: NF13187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13187_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 79 - 458
Target Start/End: Original strand, 37225351 - 37225730
Alignment:
| Q |
79 |
ataagtctataaccacaaacaatttagaacttaaaacttatgagcaaagcaacctaagaatctacaacatgtggtgatttagactgagcatatggtggat |
178 |
Q |
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| T |
37225351 |
ataagtctataaccacaaacaatttagaacttaaaacttatgagcaaagcaacctaagaatctacaacatgtggtgatttagactgagcatatggtggat |
37225450 |
T |
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| Q |
179 |
ttagagttgcaaggaaaaagcaaaagagagaataagcaaaaacctgaagccagaaggtttatccggtgagtgaaattcaggatgaacaataattttaatg |
278 |
Q |
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| T |
37225451 |
ttagagttgcaaggaaaaagtaaaagagagaataagcaaaaacctgaagccagaaggtttatccggtgagtgaaatttaggatgaacaataattttaatg |
37225550 |
T |
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| Q |
279 |
aaatccctccagaacaagtttttatcccctgaaacattgaagcttgtaccatactttattgaatcatcctttacttccttatctgcatacacttgtttat |
378 |
Q |
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| T |
37225551 |
aaatccctccagaacaagtttttatcccctgaaacattgaagcttgtaccatactttattgaatcatccgttacttccttatctgcatacacttgcttat |
37225650 |
T |
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| Q |
379 |
cttcttctttaagattaaagaaagcaaaaacttggtcaaccattttctccatgagactctttgatacagagtgattggtt |
458 |
Q |
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| T |
37225651 |
cttcttctttaaggttaaagaaagcaaaaacttggtcaaccattttctccatgagactctttgatacagagtgattggtt |
37225730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37224737 - 37224817
Alignment:
| Q |
1 |
aatcatattcttaaagaaccgtgcacaactcaaatcagatacttataatgagacggatggagtagtacttaagttaacata |
81 |
Q |
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| T |
37224737 |
aatcatattcttaaagaaccgtgcacaactcaaatcagatacttataatgagacggatggagtagtacttaagttaacata |
37224817 |
T |
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