View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13188_high_3 (Length: 361)
Name: NF13188_high_3
Description: NF13188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13188_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 21365826 - 21365680
Alignment:
| Q |
1 |
ttgataacatgaaactttattgaaccactacaagttgtcacaatgcattttccattaagctctttctggcattctttctttttgcaactcaggtaatctg |
100 |
Q |
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| T |
21365826 |
ttgataacatgaaactttattgaaccactgcaagttgtcacaatgcattttccattaagctctttcttgcattctttctttttgcaacttaggtaatctg |
21365727 |
T |
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| Q |
101 |
gatcatttttcaagtactgtgcctacattatacatagcattattatt |
147 |
Q |
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| T |
21365726 |
gatcgtttttcaagtactgtgcctacattatacatagcattattatt |
21365680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 15026427 - 15026299
Alignment:
| Q |
1 |
ttgataacatgaaactttattgaaccactacaagttgtcacaatgcattttccattaagctctttctggcattctttctttttgcaactcaggtaatctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||| |||||||||||||||||| |||| |||||||| |
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| T |
15026427 |
ttgataacatgaaactttattgaaccactacaagttgtcacactgcatttcccattctgttctttcttgcattctttctttttgcagctcatgtaatctg |
15026328 |
T |
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| Q |
101 |
gatcatttttcaagtactgtgcctacatt |
129 |
Q |
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| T |
15026327 |
gatcgtttttcaagtattgtgcctacatt |
15026299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 26695967 - 26695899
Alignment:
| Q |
5 |
taacatgaaactttattgaaccactacaagttgtcacaatgcattttccattaagctctttctggcatt |
73 |
Q |
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| T |
26695967 |
taacatgaaactttattgaaccactacaagttgtcacaatgcatttcccattaagctctttcttgcatt |
26695899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 26695902 - 26695860
Alignment:
| Q |
126 |
cattatacatagcattattatttcaagatatatatagtacttt |
168 |
Q |
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| T |
26695902 |
cattatacatagcattattatttcaagatatatatagtacttt |
26695860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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