View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13188_high_5 (Length: 255)

Name: NF13188_high_5
Description: NF13188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13188_high_5
NF13188_high_5
[»] chr3 (14 HSPs)
chr3 (20-255)||(19389953-19390188)
chr3 (20-91)||(10525114-10525185)
chr3 (193-255)||(22968569-22968631)
chr3 (192-255)||(6269551-6269614)
chr3 (200-255)||(34084247-34084302)
chr3 (192-255)||(39771769-39771832)
chr3 (213-255)||(45182981-45183023)
chr3 (213-252)||(35514266-35514305)
chr3 (213-255)||(6503694-6503736)
chr3 (213-255)||(6931019-6931061)
chr3 (200-255)||(22922144-22922199)
chr3 (213-255)||(11018337-11018379)
chr3 (213-255)||(33040953-33040995)
chr3 (213-250)||(6890998-6891035)
[»] chr7 (10 HSPs)
chr7 (192-255)||(5555466-5555529)
chr7 (200-255)||(8394112-8394167)
chr7 (193-255)||(14777232-14777294)
chr7 (200-255)||(36630803-36630858)
chr7 (193-255)||(3114221-3114283)
chr7 (213-255)||(8867856-8867898)
chr7 (213-255)||(34389181-34389223)
chr7 (213-255)||(37002269-37002311)
chr7 (200-245)||(26502797-26502842)
chr7 (200-245)||(26589872-26589917)
[»] chr2 (14 HSPs)
chr2 (193-252)||(2958228-2958287)
chr2 (193-255)||(35962695-35962757)
chr2 (193-255)||(42439966-42440028)
chr2 (191-255)||(41251759-41251823)
chr2 (193-255)||(6403929-6403991)
chr2 (193-255)||(17445164-17445226)
chr2 (192-255)||(18981596-18981658)
chr2 (193-255)||(32127266-32127328)
chr2 (213-255)||(45418583-45418625)
chr2 (213-255)||(8147351-8147393)
chr2 (193-255)||(16405580-16405642)
chr2 (213-255)||(44084728-44084770)
chr2 (213-252)||(26237957-26237996)
chr2 (219-255)||(771005-771041)
[»] scaffold0069 (1 HSPs)
scaffold0069 (193-255)||(17822-17884)
[»] chr5 (16 HSPs)
chr5 (193-254)||(36293747-36293808)
chr5 (192-253)||(39434675-39434736)
chr5 (200-255)||(13817964-13818019)
chr5 (200-254)||(1776502-1776556)
chr5 (193-255)||(26283443-26283505)
chr5 (200-255)||(10033914-10033969)
chr5 (213-253)||(31680367-31680407)
chr5 (200-255)||(19985926-19985981)
chr5 (193-255)||(3155756-3155818)
chr5 (213-255)||(17332676-17332718)
chr5 (213-255)||(12278985-12279027)
chr5 (213-255)||(31501841-31501883)
chr5 (213-255)||(37254641-37254683)
chr5 (193-255)||(39657631-39657693)
chr5 (200-249)||(14316645-14316694)
chr5 (215-255)||(36291373-36291413)
[»] chr4 (22 HSPs)
chr4 (192-255)||(20129289-20129352)
chr4 (193-255)||(13012168-13012230)
chr4 (193-255)||(47500753-47500815)
chr4 (192-255)||(25930687-25930750)
chr4 (192-255)||(26439404-26439467)
chr4 (200-255)||(36382470-36382525)
chr4 (193-255)||(29319830-29319892)
chr4 (193-255)||(34407409-34407471)
chr4 (213-255)||(6690360-6690402)
chr4 (213-255)||(30216867-30216909)
chr4 (215-255)||(43143709-43143749)
chr4 (216-255)||(3293021-3293060)
chr4 (200-255)||(40529000-40529057)
chr4 (193-255)||(43355884-43355946)
chr4 (213-254)||(7769328-7769369)
chr4 (214-255)||(42333901-42333942)
chr4 (213-250)||(49908782-49908819)
chr4 (213-255)||(10353009-10353051)
chr4 (213-255)||(50205202-50205244)
chr4 (213-250)||(5517494-5517531)
chr4 (200-245)||(27363348-27363393)
chr4 (215-255)||(30109958-30109998)
[»] scaffold0002 (1 HSPs)
scaffold0002 (193-255)||(480582-480644)
[»] chr6 (6 HSPs)
chr6 (193-255)||(398597-398659)
chr6 (193-255)||(34948883-34948945)
chr6 (192-254)||(13837800-13837862)
chr6 (213-255)||(18339106-18339148)
chr6 (213-255)||(28996730-28996772)
chr6 (213-249)||(13647017-13647053)
[»] chr1 (8 HSPs)
chr1 (193-255)||(26144235-26144297)
chr1 (200-255)||(32982181-32982236)
chr1 (193-255)||(7433425-7433487)
chr1 (200-255)||(42311066-42311121)
chr1 (221-254)||(321503-321536)
chr1 (213-255)||(35907552-35907594)
chr1 (214-255)||(41972400-41972440)
chr1 (213-249)||(44352614-44352650)
[»] chr8 (10 HSPs)
chr8 (200-255)||(39914502-39914557)
chr8 (200-255)||(15838273-15838328)
chr8 (193-255)||(34136950-34137012)
chr8 (200-255)||(29728511-29728566)
chr8 (213-255)||(4404008-4404050)
chr8 (217-255)||(16788150-16788188)
chr8 (213-255)||(23402108-23402150)
chr8 (213-255)||(36408551-36408593)
chr8 (213-253)||(2729323-2729363)
chr8 (200-253)||(3648921-3648974)
[»] scaffold2142 (1 HSPs)
scaffold2142 (193-255)||(502-564)
[»] scaffold0090 (2 HSPs)
scaffold0090 (43-98)||(50505-50560)
scaffold0090 (113-162)||(41055-41104)
[»] scaffold0502 (1 HSPs)
scaffold0502 (213-255)||(5230-5272)
[»] scaffold0154 (1 HSPs)
scaffold0154 (213-255)||(31480-31522)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 19389953 - 19390188
Alignment:
Q  20 tgtagaacttcgtctatgacttgtgattggatcatgctaaagattttattggaaagtgttatccttaagggatacaagtatgaactcatatggtgaatag 119  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19389953 tgtagaacttcatctatgacttgtgattggatcatgctaaagattttattggaaagtgttatccttaagggatataagtatgaactcatatggtgaatag 19390052  T
Q  120 tatggctatcctggaattcgcttatctatccaaactttcatccttgtcgtagtcctttatcttgaactgtagtcatgggaggttctaccgtgtggcgacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19390053 tatggctatcctggaattcgcttatctatccaaactttcatccttgtcgtagtcctttatcttgaactgtagtcatgggaggttctaccgtgtggcgacc 19390152  T
Q  220 ccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||||||||| ||||||||||||||||||    
T  19390153 ccgggcggtcgtccgggttcgatcgataatttttgc 19390188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 10525114 - 10525185
Alignment:
Q  20 tgtagaacttcgtctatgacttgtgattggatcatgctaaagattttattggaaagtgttatccttaaggga 91  Q
    |||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10525114 tgtagaactttgtgtatgacttatgattggatcatgctaaagattttattgaaaagtgttatccttaaggga 10525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 22968631 - 22968569
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22968631 catgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgc 22968569  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 6269614 - 6269551
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  6269614 tcatgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgc 6269551  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 34084302 - 34084247
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  34084302 ggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgc 34084247  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 39771769 - 39771832
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| ||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  39771769 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgc 39771832  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 45182981 - 45183023
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  45182981 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 45183023  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 35514266 - 35514305
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttt 252  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  35514266 ggcgaccccggacggtcgtccgggctcgatcgataatttt 35514305  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 6503736 - 6503694
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  6503736 ggcgaccccgggcggtcgcccgggctcgatcgattatttttgc 6503694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 6931061 - 6931019
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  6931061 ggcgaccccggacggtcgcccgggctcgatcgataatttttgc 6931019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 22922144 - 22922199
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||| ||||| |||||| ||||||||||||  |||||||||||||| ||||||||    
T  22922144 ggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgc 22922199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 11018379 - 11018337
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||| || |||||||||||||||||||||    
T  11018379 ggcgactccgggcggtcgcccaggctcgatcgataatttttgc 11018337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 33040953 - 33040995
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||||||||||  |||||||||| ||||||||||||    
T  33040953 ggcgaccccgggcggtcgctcgggctcgattgataatttttgc 33040995  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 6890998 - 6891035
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatt 250  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  6890998 ggcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 5555466 - 5555529
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  5555466 tcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 5555529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 8394112 - 8394167
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  8394112 ggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 8394167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 14777294 - 14777232
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgc 14777232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 36630803 - 36630858
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||    
T  36630803 ggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgc 36630858  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 3114283 - 3114221
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||||    
T  3114283 catgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgc 3114221  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 8867898 - 8867856
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  8867898 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 8867856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 34389223 - 34389181
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  34389223 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 34389181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 37002311 - 37002269
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  37002311 ggcgaccccgggcggtcgttcggtctcgatcgataatttttgc 37002269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 26502797 - 26502842
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcga 245  Q
    ||||| |||||||||||||||| ||| |||| ||||||||||||||    
T  26502797 ggttccaccgtgtggcgaccccaggcagtcgcccgggctcgatcga 26502842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 26589917 - 26589872
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcga 245  Q
    ||||| |||||||||||||||| ||| |||| ||||||||||||||    
T  26589917 ggttccaccgtgtggcgaccccaggcagtcgcccgggctcgatcga 26589872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 2958287 - 2958228
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttt 252  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt 2958228  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 35962695 - 35962757
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  35962695 catgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgc 35962757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 42439966 - 42440028
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 42440028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 41251823 - 41251759
Alignment:
Q  191 gtcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  41251823 gtcatgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgc 41251759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 6403991 - 6403929
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  6403991 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 6403929  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 17445226 - 17445164
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgc 17445164  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 18981596 - 18981658
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  18981596 tcatgggcggttctaccgtatggcgaccc-gggcggtcgtccgggctcgattgataatttttgc 18981658  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 32127328 - 32127266
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||    
T  32127328 catgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgc 32127266  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 45418583 - 45418625
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  45418583 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 45418625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 8147351 - 8147393
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  8147351 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgc 8147393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 16405580 - 16405642
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||| | ||| ||||| ||||||||| |||||||| |||||||||||||||    
T  16405580 catgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgc 16405642  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 44084770 - 44084728
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  44084770 ggcgaccccgggcagtcgcccgggctcgatcgataatttttgc 44084728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 26237957 - 26237996
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttt 252  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  26237957 ggcgaccccgggcggtcgcccgggctcgatcgatattttt 26237996  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 771005 - 771041
Alignment:
Q  219 cccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  771005 cccgggcggtcgcccgggctcgatcgataacttttgc 771041  T

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Target: scaffold0069 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 17822 - 17884
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  17822 catgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgc 17884  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 36293808 - 36293747
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttg 254  Q
    |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  36293808 catgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttg 36293747  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 39434675 - 39434736
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataattttt 253  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  39434675 tcatgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttt 39434736  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 13817964 - 13818019
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||||||||    
T  13817964 ggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgc 13818019  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 1776556 - 1776502
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttg 254  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  1776556 ggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttg 1776502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 26283505 - 26283443
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgc 26283443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 10033914 - 10033969
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| |||||||||||| || ||| ||||||||||||||||||||||||    
T  10033914 ggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgc 10033969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 31680367 - 31680407
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataattttt 253  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  31680367 ggcgaccccgggcggtcgcccgggctcgatcgataattttt 31680407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 19985926 - 19985981
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||| |||||| || ||||| |||||||||||||| ||||||||||||||||||||    
T  19985926 ggttttaccgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgc 19985981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 3155818 - 3155756
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||| ||| |||||| ||||||||||||  ||||||||||| |||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgc 3155756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 17332718 - 17332676
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  17332718 ggcgaccccgggcgttcgcccgggctcgatcgataatttttgc 17332676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 12279027 - 12278985
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||| |||||||||||| |||| |||||||||||||||||||    
T  12279027 ggcgatcccgggcggtcgcccggactcgatcgataatttttgc 12278985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 31501883 - 31501841
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||| | | ||||||||||||||||||||||||    
T  31501883 ggcgaccccgggcgattgcccgggctcgatcgataatttttgc 31501841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 37254641 - 37254683
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||| |||||||| || |||||||||||||||||||||    
T  37254641 ggcgaccccaggcggtcgcccaggctcgatcgataatttttgc 37254683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 39657693 - 39657631
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||  | |||||||||| | ||||||| |||||||||| ||||||||||||    
T  39657693 catgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttgc 39657631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 14316645 - 14316694
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataat 249  Q
    ||||||||||| |||||| | |||||||||| || |||||||||||||||    
T  14316645 ggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 36291373 - 36291413
Alignment:
Q  215 cgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||| ||||||||||||||||| |||||| |||||||||||    
T  36291373 cgactccgggcggtcgtccgggttcgatcaataatttttgc 36291413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 20129289 - 20129352
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  20129289 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 20129352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 13012168 - 13012230
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  13012168 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 13012230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 47500753 - 47500815
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 47500815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 25930687 - 25930750
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| ||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||    
T  25930687 tcatgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgc 25930750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 26439467 - 26439404
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| ||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  26439467 tcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgc 26439404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 36382525 - 36382470
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||    
T  36382525 ggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgc 36382470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 29319892 - 29319830
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||    
T  29319892 catgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgc 29319830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 34407471 - 34407409
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  34407471 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgc 34407409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 6690402 - 6690360
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  6690402 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 6690360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 30216909 - 30216867
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  30216909 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgc 30216867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 43143749 - 43143709
Alignment:
Q  215 cgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43143749 cgaccccgggcggtcgcccgggctcgatcgataatttttgc 43143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 3293060 - 3293021
Alignment:
Q  216 gaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  3293060 gaccccgggcggtcgcccgggctcgatcgataatttttgc 3293021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 40529000 - 40529057
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcg--gtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| ||||||||| |||||  ||||||||| |||||||||||||||||||    
T  40529000 ggttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgc 40529057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 43355884 - 43355946
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| |||||||| ||| |||| ||||||||| ||||||||||||||    
T  43355884 catgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgc 43355946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 7769328 - 7769369
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttg 254  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  7769328 ggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 42333942 - 42333901
Alignment:
Q  214 gcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  42333942 gcgatcccgggcggtcgtccgggctcaatcgataatttttgc 42333901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 49908819 - 49908782
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatt 250  Q
    |||||||||||||||||| |||||||||||||||||||    
T  49908819 ggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 10353051 - 10353009
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  10353051 ggcgacccctggcggtcgcccgggctcaatcgataatttttgc 10353009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 50205244 - 50205202
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||    
T  50205244 ggcgatcccgggcggtcgcccgagctcgatcgataatttttgc 50205202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 5517531 - 5517494
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatt 250  Q
    |||||||||||||||||| | |||||||||||||||||    
T  5517531 ggcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 27363348 - 27363393
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcga 245  Q
    |||| |||||| |||||||| |||||||||| ||||||||||||||    
T  27363348 ggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcga 27363393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 30109958 - 30109998
Alignment:
Q  215 cgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||| |||||| |||| |||||||||||||||||||    
T  30109958 cgaccccggacggtcgcccggactcgatcgataatttttgc 30109998  T

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Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 480644 - 480582
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  480644 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 480582  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 398597 - 398659
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 398659  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 34948945 - 34948883
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||| |||||||||| |||||||| || |||||||||||||||||||||    
T  34948945 catgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgc 34948883  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 254
Target Start/End: Original strand, 13837800 - 13837862
Alignment:
Q  192 tcatgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttg 254  Q
    ||||||| ||||||||||| ||||||||||||||| |||  |||| |||||||||||||||||    
T  13837800 tcatgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttg 13837862  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 18339106 - 18339148
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgc 18339148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 28996730 - 28996772
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  28996730 ggcgaccccgggcggtcgcccgagctcgatcgataatttttgc 28996772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 13647017 - 13647053
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataat 249  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13647017 ggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 26144235 - 26144297
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  26144235 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 26144297  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 32982236 - 32982181
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||||||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgc 32982181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 7433425 - 7433487
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||||||||| |||| |||||||||||||| ||| |||||||| |||||||||||    
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgc 7433487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 42311121 - 42311066
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| |||||||||| | || ||| ||||||||||||||||||||||||    
T  42311121 ggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgc 42311066  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 321536 - 321503
Alignment:
Q  221 cgggcggtcgtccgggctcgatcgataatttttg 254  Q
    ||||||||||||||||||||||||||||||||||    
T  321536 cgggcggtcgtccgggctcgatcgataatttttg 321503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 35907552 - 35907594
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| |||||||||| ||||||| ||||||||||||||||    
T  35907552 ggcgacctcgggcggtcgcccgggcttgatcgataatttttgc 35907594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 41972440 - 41972400
Alignment:
Q  214 gcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  41972440 gcgaccccgggcggtcg-cctggctcgatcgataatttttgc 41972400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 44352650 - 44352614
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataat 249  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  44352650 ggcgaccccgggaggtcgcccgggctcgatcgataat 44352614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 39914502 - 39914557
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  39914502 ggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgc 39914557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 15838273 - 15838328
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| ||||||||||||||||||  ||||||||||| ||||||||||||    
T  15838273 ggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgc 15838328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 34137012 - 34136950
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||  ||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  34137012 catgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgc 34136950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 29728566 - 29728511
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||||| |||||||||||| |||||| ||| ||||||||||||| ||||||    
T  29728566 ggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgc 29728511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 4404008 - 4404050
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  4404008 ggcgaccccaggcggtcgcccgggctcgatcgataatttttgc 4404050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 16788188 - 16788150
Alignment:
Q  217 accccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  16788188 accccgggcggtcgcccgggctcgatcgataatttttgc 16788150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 23402108 - 23402150
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| |||||||||||||||||| |||||    
T  23402108 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgc 23402150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 36408551 - 36408593
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  36408551 ggcgacctcgggcggtcgcccgggctcgatcgataatttttgc 36408593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 2729363 - 2729323
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataattttt 253  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  2729363 ggcgaccccgggcggacgcccgggctcgatcgataattttt 2729323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 3648974 - 3648921
Alignment:
Q  200 ggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataattttt 253  Q
    ||||||||||| |||||| || || | |||| ||||||||||||||||||||||    
T  3648974 ggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttt 3648921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 502 - 564
Alignment:
Q  193 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||| ||||| ||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  502 catgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgc 564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 50560 - 50505
Alignment:
Q  43 tgattggatcatgctaaagattttattggaaagtgttatccttaagggatacaagt 98  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||    
T  50560 tgattggatcatgctaaacattttattgaaaagtgttatccctaagggatataagt 50505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 41104 - 41055
Alignment:
Q  113 tgaatagtatggctatcctggaattcgcttatctatccaaactttcatcc 162  Q
    |||||||||| |||||| || |||| |||||||||| |||||||||||||    
T  41104 tgaatagtatagctatcttgaaatttgcttatctatacaaactttcatcc 41055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 5230 - 5272
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgc 5272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 31480 - 31522
Alignment:
Q  213 ggcgaccccgggcggtcgtccgggctcgatcgataatttttgc 255  Q
    ||||||||| | |||||| ||||||||||||||||||||||||    
T  31480 ggcgaccccagacggtcgcccgggctcgatcgataatttttgc 31522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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