View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13188_high_6 (Length: 241)
Name: NF13188_high_6
Description: NF13188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13188_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 7488176 - 7488400
Alignment:
| Q |
1 |
ggacctctctagttgttgggttccacataattaactcatcaagacaactcttatgaaaccaacacaaaccttggagacagaaaacgccattgcaactacc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7488176 |
ggacctctctagttgtagggttccacataattaactcatcaagacaactcttatgaaaccaacacaaaccttggagacagaaaacgccattgcaactacc |
7488275 |
T |
|
| Q |
101 |
atatgattccattcttataaaagtgcgacaattgctgttggaaaagagggatttgatgtgtattacggtgtcacatgagagaagagttacatagggtttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7488276 |
atatgattccattcttataaaagtgcgacaattgctgttggaaaagagggatttgatgtgtattacggtgtgacatgagagaagagttacatagggtttt |
7488375 |
T |
|
| Q |
201 |
gtttcatgaaggatcatgagattag |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7488376 |
gtttcatgaaggatcatgagattag |
7488400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 7475396 - 7475559
Alignment:
| Q |
58 |
accaacacaaaccttggagacagaaaacgccattgcaactaccatatgattccattcttataaaagtgcgacaattgctgttggaaaagagggatttgat |
157 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |||||||||||||||| ||| |||| || || | || |||||||| |||||||||| |
|
|
| T |
7475396 |
accaacacaaacctttgagacagaaaacaccattgaaactaccatatgattcaattgttat---aggttgatgggagttgctggaaaagggggatttgat |
7475492 |
T |
|
| Q |
158 |
gtgtattacggtgtcacatgagagaagagttacatagggttttgtttcatgaaggatcatgagatta |
224 |
Q |
| |
|
||| |||| | |||||| ||||||||| |||| |||||||| | ||||| |||||| ||||||||| |
|
|
| T |
7475493 |
gtgcattaggttgtcacgtgagagaagggttatatagggttgttcttcataaaggattatgagatta |
7475559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 6943732 - 6943675
Alignment:
| Q |
136 |
tgttggaaaagagggatttgatgtgtattacggtgtcacatgagagaagagttacata |
193 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
6943732 |
tgttggaaaagggggatttgatgtgtattaggttgtcacatgagagaagggttacata |
6943675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7475306 - 7475354
Alignment:
| Q |
1 |
ggacctctctagttgttgggttccacataattaactcatcaagacaact |
49 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7475306 |
ggacctctctagttgttgggttccaaataattaactcatctagacaact |
7475354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University