View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13188_low_1 (Length: 387)

Name: NF13188_low_1
Description: NF13188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13188_low_1
NF13188_low_1
[»] chr7 (36 HSPs)
chr7 (23-230)||(42663420-42663628)
chr7 (274-378)||(42663271-42663375)
chr7 (274-346)||(45256619-45256691)
chr7 (275-345)||(16829573-16829643)
chr7 (274-346)||(22588849-22588921)
chr7 (275-345)||(16954008-16954078)
chr7 (274-348)||(48395353-48395427)
chr7 (162-233)||(48395246-48395317)
chr7 (162-230)||(8352772-8352840)
chr7 (164-230)||(6892638-6892704)
chr7 (164-230)||(48314366-48314432)
chr7 (165-230)||(17909055-17909120)
chr7 (169-230)||(22588966-22589027)
chr7 (279-345)||(7212552-7212618)
chr7 (164-225)||(6427210-6427271)
chr7 (160-201)||(41985123-41985164)
chr7 (163-203)||(6427354-6427394)
chr7 (274-346)||(17908952-17909024)
chr7 (163-203)||(27164869-27164909)
chr7 (194-230)||(34820640-34820676)
chr7 (161-220)||(2849536-2849595)
chr7 (164-203)||(29162311-29162350)
chr7 (163-230)||(40231711-40231777)
chr7 (155-210)||(42552890-42552945)
chr7 (161-215)||(5068643-5068697)
chr7 (160-230)||(12007191-12007261)
chr7 (168-230)||(47925341-47925403)
chr7 (162-203)||(30864449-30864490)
chr7 (162-191)||(35005141-35005170)
chr7 (162-203)||(38344758-38344799)
chr7 (162-230)||(27704433-27704500)
chr7 (162-202)||(31274562-31274602)
chr7 (162-202)||(37392041-37392081)
chr7 (162-202)||(44187689-44187729)
chr7 (162-230)||(47448824-47448892)
chr7 (162-230)||(48639389-48639456)
[»] chr3 (33 HSPs)
chr3 (275-346)||(9326873-9326944)
chr3 (164-230)||(9326990-9327056)
chr3 (163-230)||(41448181-41448248)
chr3 (274-348)||(11225016-11225090)
chr3 (161-230)||(47187525-47187594)
chr3 (161-230)||(19623257-19623326)
chr3 (162-230)||(31143268-31143336)
chr3 (162-230)||(39901589-39901657)
chr3 (166-225)||(41850945-41851004)
chr3 (161-230)||(48405407-48405476)
chr3 (162-203)||(52454126-52454167)
chr3 (163-203)||(34021495-34021535)
chr3 (274-346)||(37073769-37073841)
chr3 (164-223)||(5393846-5393905)
chr3 (163-230)||(19150324-19150391)
chr3 (161-224)||(23377979-23378042)
chr3 (164-215)||(39284687-39284738)
chr3 (176-230)||(6976942-6976996)
chr3 (163-209)||(21306024-21306070)
chr3 (162-220)||(38017942-38018000)
chr3 (162-203)||(7246-7287)
chr3 (163-200)||(3958053-3958090)
chr3 (161-202)||(35074123-35074164)
chr3 (162-203)||(36818954-36818995)
chr3 (161-202)||(46473125-46473166)
chr3 (161-202)||(53102935-53102976)
chr3 (162-203)||(53473608-53473649)
chr3 (161-201)||(3069608-3069648)
chr3 (162-202)||(27198193-27198233)
chr3 (163-203)||(32931950-32931990)
chr3 (162-202)||(38359339-38359379)
chr3 (162-202)||(49361857-49361897)
chr3 (162-230)||(50559217-50559285)
[»] chr1 (31 HSPs)
chr1 (278-345)||(17777346-17777413)
chr1 (274-346)||(3904293-3904365)
chr1 (161-230)||(35883612-35883681)
chr1 (274-339)||(1523187-1523252)
chr1 (274-339)||(2279218-2279283)
chr1 (165-233)||(1922427-1922495)
chr1 (164-230)||(3672341-3672406)
chr1 (161-215)||(33694221-33694275)
chr1 (165-227)||(40809498-40809559)
chr1 (162-230)||(4466693-4466760)
chr1 (162-210)||(38520018-38520066)
chr1 (164-203)||(29362724-29362763)
chr1 (162-212)||(12021958-12022008)
chr1 (160-210)||(17526415-17526465)
chr1 (164-202)||(40238438-40238476)
chr1 (164-202)||(50528090-50528128)
chr1 (165-230)||(1523299-1523364)
chr1 (165-202)||(3558847-3558884)
chr1 (165-230)||(5574265-5574329)
chr1 (162-203)||(9987949-9987990)
chr1 (161-230)||(11947792-11947861)
chr1 (161-230)||(35369697-35369765)
chr1 (161-190)||(36669415-36669444)
chr1 (155-203)||(6829815-6829863)
chr1 (167-203)||(25130706-25130742)
chr1 (162-230)||(30535989-30536057)
chr1 (162-206)||(42577470-42577514)
chr1 (162-202)||(44672063-44672103)
chr1 (162-230)||(48858821-48858889)
chr1 (162-230)||(48872377-48872444)
chr1 (162-230)||(48983673-48983741)
[»] chr5 (27 HSPs)
chr5 (274-347)||(844144-844217)
chr5 (274-345)||(43057546-43057617)
chr5 (274-342)||(6968604-6968672)
chr5 (274-345)||(34270226-34270297)
chr5 (161-230)||(11148508-11148577)
chr5 (164-220)||(8728596-8728652)
chr5 (164-230)||(26754643-26754709)
chr5 (164-230)||(41621933-41621999)
chr5 (163-233)||(43057434-43057504)
chr5 (161-230)||(30838370-30838439)
chr5 (164-220)||(2629818-2629874)
chr5 (164-230)||(4719650-4719716)
chr5 (164-230)||(35570813-35570879)
chr5 (164-225)||(3109597-3109658)
chr5 (163-209)||(844035-844081)
chr5 (164-202)||(17063865-17063903)
chr5 (161-203)||(32634705-32634747)
chr5 (163-209)||(34270544-34270590)
chr5 (164-225)||(15004734-15004795)
chr5 (164-205)||(27440479-27440520)
chr5 (162-203)||(27487885-27487926)
chr5 (176-225)||(34674868-34674917)
chr5 (162-230)||(611862-611930)
chr5 (162-190)||(6964415-6964443)
chr5 (163-203)||(9594477-9594517)
chr5 (162-190)||(12401190-12401218)
chr5 (161-225)||(14126413-14126476)
[»] chr2 (40 HSPs)
chr2 (274-344)||(29471921-29471991)
chr2 (274-346)||(40874149-40874221)
chr2 (275-345)||(24727310-24727380)
chr2 (163-232)||(43820744-43820813)
chr2 (162-223)||(22966784-22966845)
chr2 (164-233)||(24727592-24727661)
chr2 (275-339)||(15123827-15123891)
chr2 (164-220)||(25507255-25507311)
chr2 (162-230)||(29472036-29472103)
chr2 (163-230)||(13453960-13454027)
chr2 (163-230)||(40106608-40106675)
chr2 (274-344)||(10099341-10099411)
chr2 (164-233)||(40874263-40874332)
chr2 (163-215)||(31227570-31227622)
chr2 (274-344)||(10041320-10041390)
chr2 (164-230)||(15123941-15124007)
chr2 (167-233)||(40602392-40602458)
chr2 (274-339)||(9432110-9432175)
chr2 (162-203)||(27307263-27307304)
chr2 (162-202)||(1352386-1352426)
chr2 (163-223)||(37767778-37767838)
chr2 (164-220)||(45376236-45376292)
chr2 (164-203)||(3196119-3196158)
chr2 (163-230)||(7258567-7258634)
chr2 (162-201)||(19695714-19695753)
chr2 (161-224)||(34141439-34141501)
chr2 (160-230)||(9979092-9979162)
chr2 (161-203)||(29168722-29168764)
chr2 (164-206)||(30416360-30416402)
chr2 (164-230)||(31629604-31629670)
chr2 (161-203)||(42821370-42821412)
chr2 (291-344)||(14151652-14151705)
chr2 (177-230)||(15610837-15610890)
chr2 (161-233)||(5031920-5031992)
chr2 (164-224)||(15260307-15260367)
chr2 (161-205)||(29871382-29871426)
chr2 (163-211)||(31415239-31415287)
chr2 (165-201)||(39285854-39285890)
chr2 (162-190)||(41353542-41353570)
chr2 (162-230)||(44050013-44050081)
[»] chr8 (26 HSPs)
chr8 (161-230)||(26629115-26629184)
chr8 (274-339)||(37379333-37379398)
chr8 (162-230)||(30170734-30170802)
chr8 (274-339)||(30170627-30170692)
chr8 (164-215)||(8835890-8835941)
chr8 (168-230)||(37379439-37379501)
chr8 (161-223)||(43066606-43066668)
chr8 (161-230)||(13592763-13592832)
chr8 (164-227)||(42652501-42652564)
chr8 (164-230)||(4721729-4721795)
chr8 (161-231)||(7376503-7376572)
chr8 (160-202)||(39719281-39719323)
chr8 (161-203)||(41273512-41273554)
chr8 (162-223)||(2730973-2731034)
chr8 (161-202)||(5740807-5740848)
chr8 (162-215)||(5771992-5772045)
chr8 (164-201)||(13884194-13884231)
chr8 (162-203)||(20288531-20288572)
chr8 (162-203)||(20996179-20996220)
chr8 (162-203)||(21075160-21075201)
chr8 (170-230)||(14127250-14127310)
chr8 (162-190)||(33817154-33817182)
chr8 (161-225)||(35701838-35701901)
chr8 (163-203)||(36064029-36064069)
chr8 (161-201)||(37392151-37392191)
chr8 (163-191)||(44010804-44010832)
[»] chr4 (46 HSPs)
chr4 (274-346)||(54221945-54222017)
chr4 (275-337)||(35206280-35206342)
chr4 (290-342)||(45652765-45652817)
chr4 (274-325)||(10762411-10762462)
chr4 (162-230)||(961274-961342)
chr4 (165-225)||(17367446-17367506)
chr4 (162-230)||(31221411-31221478)
chr4 (162-230)||(35206166-35206234)
chr4 (164-230)||(9032780-9032845)
chr4 (164-230)||(40693628-40693694)
chr4 (184-230)||(45652661-45652707)
chr4 (164-230)||(52372197-52372263)
chr4 (164-230)||(56215605-56215671)
chr4 (274-339)||(961387-961452)
chr4 (162-203)||(3222987-3223028)
chr4 (154-203)||(5208359-5208408)
chr4 (162-203)||(7632494-7632535)
chr4 (162-203)||(44368234-44368275)
chr4 (163-203)||(15638160-15638200)
chr4 (162-230)||(50291280-50291347)
chr4 (162-210)||(50831781-50831829)
chr4 (274-337)||(5903178-5903241)
chr4 (163-202)||(21685937-21685976)
chr4 (291-346)||(45511446-45511501)
chr4 (161-203)||(8026785-8026827)
chr4 (164-230)||(24045244-24045310)
chr4 (161-203)||(24235317-24235359)
chr4 (163-201)||(42915253-42915291)
chr4 (274-348)||(52832851-52832925)
chr4 (164-233)||(3078910-3078979)
chr4 (161-202)||(9162063-9162104)
chr4 (164-201)||(12387688-12387725)
chr4 (162-191)||(37727088-37727117)
chr4 (165-230)||(40760074-40760139)
chr4 (161-230)||(50890079-50890147)
chr4 (161-230)||(51255743-51255812)
chr4 (161-190)||(53384372-53384401)
chr4 (163-203)||(1796365-1796405)
chr4 (164-224)||(8810571-8810631)
chr4 (163-203)||(31092394-31092434)
chr4 (164-224)||(32012896-32012956)
chr4 (162-230)||(44272816-44272883)
chr4 (163-203)||(50721777-50721817)
chr4 (162-202)||(51296222-51296262)
chr4 (163-203)||(51377325-51377365)
chr4 (163-203)||(55268033-55268073)
[»] scaffold1625 (1 HSPs)
scaffold1625 (161-230)||(786-855)
[»] chr6 (17 HSPs)
chr6 (166-230)||(38598-38662)
chr6 (168-225)||(10840722-10840779)
chr6 (167-220)||(13093629-13093682)
chr6 (161-210)||(31883329-31883378)
chr6 (162-230)||(17551384-17551452)
chr6 (162-230)||(20029259-20029327)
chr6 (162-201)||(1196056-1196095)
chr6 (162-201)||(3180026-3180065)
chr6 (277-324)||(13093742-13093789)
chr6 (163-230)||(34792021-34792087)
chr6 (162-203)||(8505806-8505847)
chr6 (162-223)||(31204822-31204883)
chr6 (161-202)||(31517202-31517243)
chr6 (162-230)||(2242027-2242095)
chr6 (162-202)||(15722536-15722576)
chr6 (161-209)||(26554492-26554539)
chr6 (162-230)||(33683498-33683566)
[»] scaffold0635 (1 HSPs)
scaffold0635 (274-344)||(5680-5750)
[»] scaffold0086 (1 HSPs)
scaffold0086 (165-215)||(15851-15901)
[»] scaffold0054 (1 HSPs)
scaffold0054 (161-201)||(31623-31663)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 42663628 - 42663420
Alignment:
Q  23 tgcttcacatcaatggttgctgcaaagcttaccattgcaccggcttaacaaatgatattcatcatgtccatgggggaaatggtcaaatccgtctgagcca 122  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42663628 tgcttcacatcaatggttgctgcaaagctcaccattgcaccggcttaacaaatgatattcatcatgtccatgggggaaatggtcaaatccgtttgagcca 42663529  T
Q  123 cattctta-ggattctaattaggcagcaaaccttttagctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctca 221  Q
    |||| ||| |||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  42663528 catttttagggattctaattaggtagcaaaccttttagctatgaaaaatgatatttttacaatcaattttcgacaacttttgaaacaatcctatatctca 42663429  T
Q  222 tacttacat 230  Q
    |||| ||||    
T  42663428 tactcacat 42663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 42663375 - 42663271
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctctttagttaatagtgtgaaaagtagaaga 373  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42663375 gtccaatcacaagaggagaaaagtggttgtcaccaaagttgtctaatattagatgtacaaatatcaatcttctttagttaatagtgtgaaaagtagaaga 42663276  T
Q  374 attat 378  Q
    |||||    
T  42663275 attat 42663271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 45256691 - 45256619
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45256691 gtccaatcacaaaaggagaaaagtggttgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 45256619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 16829643 - 16829573
Alignment:
Q  275 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 345  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  16829643 tccaatcacaagaggagaaaagtggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16829573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 22588921 - 22588849
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    |||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  22588921 gtccaatcacaaaagaagaaaagtggttgtcaccaaagttgtctaatattagttgtacaaatatcactcctct 22588849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 16954008 - 16954078
Alignment:
Q  275 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 345  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  16954008 tccaatcacaaaaggagaaaagtggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16954078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 48395353 - 48395427
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcttt 348  Q
    |||||||| ||| || |||||||||| |||||||||  |||||||||||||| ||||||||||||||||||||||    
T  48395353 gtccaatctcaaaagaagaaaagtggttgtcaccaagattgtctaatattagttgtacaaatatcaatcctcttt 48395427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 48395246 - 48395317
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 233  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||| |||| ||| ||||| |||||||    
T  48395246 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctcttatactcacatatg 48395317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 8352772 - 8352840
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||| ||||| || |||| ||||| ||||||||||||| ||| ||||||||||||||    
T  8352772 aagagaaatgatatttatacaaccactttttgacaatttttgaaacaaccatctctctcatacttacat 8352840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 6892704 - 6892638
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||| || | || |||||||| |||||||||||||| ||||||||| ||||    
T  6892704 gagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccctctctctcatactcacat 6892638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 48314432 - 48314366
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||| || ||||  |||||||||  ||||||||||| ||||||||||||||    
T  48314432 gagaaatgatatttgtacaaccactttttaacaacttttacaacaaccctctctctcatacttacat 48314366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 17909120 - 17909055
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||| ||||||||||||||| |||| |||||||||||||| |||||||| |||| |||| ||||    
T  17909120 agaaataatatttgtacaatcattttttgacaacttttgaaataaccctctctctcgtactcacat 17909055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 22589027 - 22588966
Alignment:
Q  169 atgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||| || |||| |||||||||||||||||||| || ||||||||| ||||    
T  22589027 atgatatttgtacaaccattttttgacaacttttgaaacaaccccctctctcatactcacat 22588966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 7212618 - 7212552
Alignment:
Q  279 atcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 345  Q
    |||||||||| | |||||||  |||||||||| |||||||| | ||| |||||||||||||||||||    
T  7212618 atcacaagagaataaaagtgattgtcaccaaaattgtctaaaactagttgtacaaatatcaatcctc 7212552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 6427210 - 6427271
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    |||||||||||||| ||||| || |||| ||||||||||  ||||||||||| |||||||||    
T  6427210 gagaaatgatatttatacaaccactttttgacaacttttagaacaaccctctctctcatact 6427271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 41985164 - 41985123
Alignment:
Q  160 ctaagagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  41985164 ctaagagaaatgatatttgtacaatcaatttgtgacaacttt 41985123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 6427394 - 6427354
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  6427394 agaggaatgatatttgtacaatcaattttagacaacttttg 6427354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 17909024 - 17908952
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    |||||||||||| ||||||||| ||| | |||| ||| ||||| |||||||| |||| |||||||| ||||||    
T  17909024 gtccaatcacaaaaggagaaaaatggttctcactaaaattgtcaaatattagttgtataaatatcactcctct 17908952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 27164909 - 27164869
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  27164909 agagaaatgatatttgtacaatcaatttgtgacaacttttg 27164869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 34820640 - 34820676
Alignment:
Q  194 acaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||||||||||| ||||    
T  34820640 acaacttttgaaacaaccctctatctcatactcacat 34820676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 2849595 - 2849536
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 220  Q
    |||||||||||||||||||||||| | |||| || ||||||||||| ||| |||| ||||    
T  2849595 taagagaaatgatatttgtacaattattttttgataacttttgaaataactctctctctc 2849536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 29162350 - 29162311
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  29162350 gagaaatgatatttgtacaatcaatttgtgacaacttttg 29162311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 40231777 - 40231711
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||  ||||| |||||||||||  |||||| || |||||||||| ||||    
T  40231777 agagaaatgatatttgtacaat-tatttttgacaacttttgtgacaaccttccatctcatactcacat 40231711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 42552890 - 42552945
Alignment:
Q  155 tttagctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 210  Q
    |||| ||||||||||||||||||||||||||| ||||  |||| ||||| ||||||    
T  42552890 tttatctaagagaaatgatatttgtacaatcatttttatacaatttttgtaacaac 42552945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 5068697 - 5068643
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 215  Q
    ||||||||||||||||||||||| || |||  || ||||||||||||||| ||||    
T  5068697 taagagaaatgatatttgtacaaccattttatgataacttttgaaacaacactct 5068643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 12007261 - 12007191
Alignment:
Q  160 ctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  12007261 ctaagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 12007191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 47925341 - 47925403
Alignment:
Q  168 aatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||| || | ||  |||||||||| ||||||||||| ||||||||| ||||    
T  47925341 aatgatatttgtacaaccactctttaacaacttttggaacaaccctctctctcatactcacat 47925403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 30864490 - 30864449
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  30864490 aagagaaatgatatttgtacaaccaatttgtgacaacttttg 30864449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 35005170 - 35005141
Alignment:
Q  162 aagagaaatgatatttgtacaatcaatttt 191  Q
    ||||||||||||||||||||||||||||||    
T  35005170 aagagaaatgatatttgtacaatcaatttt 35005141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 38344758 - 38344799
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||| ||||||| |||||||||||| |||||||||||    
T  38344758 aagagaaattatatttgaacaatcaatttttgacaacttttg 38344799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 27704433 - 27704500
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||  | ||||  ||||||||||  |||||| ||||||||||||| ||||    
T  27704433 aagagaaatgatatttgtacaactatttttgtacaacttttg-tacaaccttctatctcatactcacat 27704500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 31274602 - 31274562
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    |||||||||||||||||||||| ||||||  ||||||||||    
T  31274602 aagagaaatgatatttgtacaaccaatttgtgacaactttt 31274562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 37392041 - 37392081
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    |||||||||||||||||||||| || |||| ||||||||||    
T  37392041 aagagaaatgatatttgtacaaccattttttgacaactttt 37392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 44187689 - 44187729
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    |||||||||||||| |||||||||| |||| ||||||||||    
T  44187689 aagagaaatgatatgtgtacaatcattttttgacaactttt 44187729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 47448824 - 47448892
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  47448824 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 47448892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 48639456 - 48639389
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||| || ||||  ||||||||||  |||||| ||| ||||||||| ||||    
T  48639456 aagagaaatgatatttgtacaaccatttttgtacaacttttg-tacaaccttctctctcatactcacat 48639389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 9326944 - 9326873
Alignment:
Q  275 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  9326944 tccaatcacaagaggagaaaagtggttgtcaccaaagttgtctaatattatatgtacaaatatcaatcctct 9326873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 9327056 - 9326990
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  9327056 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccatctatctcatactcacat 9326990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 41448248 - 41448181
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||| || ||||  |||||||||||||||||||||| ||||||||| ||||    
T  41448248 agagaaatgatatttgtacaaccatttttaaacaacttttgaaacaaccctctctctcatactcacat 41448181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 11225090 - 11225016
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcttt 348  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||| |||   |||||||||||| ||||||||    
T  11225090 gtccaatcacaagaggagaaaagtggctgtcattaaaattgtctaatgttaatggtacaaatatcactcctcttt 11225016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 47187594 - 47187525
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||| ||||||||||||||||| | ||||  |||||||||||||||||||| | ||||||||||||||    
T  47187594 taagaggaatgatatttgtacaattactttttcacaacttttgaaacaaccctttctctcatacttacat 47187525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 19623326 - 19623257
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||||| |||| || ||||||| ||||||   ||| ||||||||||||||    
T  19623326 taagagaaatgatatttgtacaatcactttttgataacttttaaaacaataatctctctcatacttacat 19623257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 31143268 - 31143336
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||||||| | ||| ||| ||||| ||||    
T  31143268 aagagaagtgatatttgtacaatcattttttgacaacttttgaaacaatcatctctctaatactcacat 31143336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 39901589 - 39901657
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||||| |||| || || ||||| ||||||  ||||||||||||| ||||    
T  39901589 aagagaaatgatatttgtacaatcattttttgataatttttggaacaactttctatctcatactaacat 39901657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 41850945 - 41851004
Alignment:
Q  166 gaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    |||||||||||||||||| ||  ||| ||||||||||||||||||||||  |||||||||    
T  41850945 gaaatgatatttgtacaaccatattttgacaacttttgaaacaaccctccctctcatact 41851004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 48405407 - 48405476
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||| || |||  ||||||||||| ||||||  ||| ||||||||| ||||    
T  48405407 taagagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctctcatactcacat 48405476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 52454167 - 52454126
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  52454167 aagagaaatgatatttgtacaatcaatttgtgacaacttttg 52454126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 34021535 - 34021495
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  34021535 agagaaatgatatttgtacaatcaatttgtgacaacttttg 34021495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 37073769 - 37073841
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    ||||||| ||||||| |||||||||    |||||||| || ||||||||||| ||||||||||||| ||||||    
T  37073769 gtccaataacaagagcagaaaagtgatgatcaccaaaattatctaatattagttgtacaaatatcattcctct 37073841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 5393905 - 5393846
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 223  Q
    ||||||||||||||||||||||| |||   ||||||||||  |||||||||| |||||||    
T  5393905 gagaaatgatatttgtacaatcattttcttacaacttttgggacaaccctctctctcata 5393846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 19150391 - 19150324
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||| ||||  ||||||||||  |||||  ||| ||||||| ||||||    
T  19150391 agagaaatgatatttgtacaatcattttttaacaacttttgtgacaactttctctctcatatttacat 19150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 23377979 - 23378042
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 224  Q
    ||||||||||||||||||| ||| || |||   ||||||||||| |||||||||| ||||||||    
T  23377979 taagagaaatgatatttgtgcaaccattttcttacaacttttgagacaaccctctctctcatac 23378042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 39284738 - 39284687
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 215  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||||| ||||    
T  39284738 gagaaatgatatttgtatattcactttttgacaacttttgaaacaactctct 39284687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 6976942 - 6976996
Alignment:
Q  176 ttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||| |||| |||||||||| |||||||||||| | ||||||| ||||    
T  6976942 ttgtacaatcactttttgacaacttttaaaacaaccctctctatcatactcacat 6976996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 21306024 - 21306070
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaa 209  Q
    |||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  21306024 agagaaatgatatttgtacagtcattttgcgacaacttttgagacaa 21306070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 38018000 - 38017942
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 220  Q
    |||||||||||||||||||||| || | || |||||||| ||||||||| |||| ||||    
T  38018000 aagagaaatgatatttgtacaaccactctttgacaacttatgaaacaactctctctctc 38017942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 7287 - 7246
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||||||| |||  |||||||||||    
T  7287 aagagaaatgatatttgtacaatcattttctgacaacttttg 7246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 3958090 - 3958053
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaactt 200  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  3958090 agagaaatgatatttgtacaatcaatttgtgacaactt 3958053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 35074164 - 35074123
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    |||||||||||||||||||||||||| |||  ||||||||||    
T  35074164 taagagaaatgatatttgtacaatcattttgggacaactttt 35074123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 36818954 - 36818995
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  36818954 aagagaaatgatatttgtacaaccaatttgtgacaacttttg 36818995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 46473125 - 46473166
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||| || ||| |||||||||||    
T  46473125 taagagaaatgatatttgtacaaccactttgcgacaactttt 46473166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 53102976 - 53102935
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||| ||||||||  ||||||||||    
T  53102976 taagagaaatgatatttgtacgatcaatttgtgacaactttt 53102935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 53473608 - 53473649
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||||  || ||||||||    
T  53473608 aagagaaatgatatttgtacaatcaatttgtgataacttttg 53473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 3069648 - 3069608
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    ||||||||||||||||||||||| ||||||  |||||||||    
T  3069648 taagagaaatgatatttgtacaaccaatttgtgacaacttt 3069608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 27198233 - 27198193
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||||| |||| || |||||||    
T  27198233 aagagaaatgatatttgtacaatcattttttgataactttt 27198193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 32931990 - 32931950
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  32931990 agagaaatgatatttgtacaaccaatttgtgacaacttttg 32931950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 38359379 - 38359339
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||||| ||||  |||||||||    
T  38359379 aagagaaatgatatttgtacaatcattttttaacaactttt 38359339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 49361897 - 49361857
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||||| ||||  |||||||||    
T  49361897 aagagaaatgatatttgtacaatcatttttgtacaactttt 49361857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 50559285 - 50559217
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||  | |||| |||||||||||  ||||   ||| ||||||||||||||    
T  50559285 aagagaaatgatatttgtacaactattttttgacaacttttgtgacaattttctctctcatacttacat 50559217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 17777413 - 17777346
Alignment:
Q  278 aatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 345  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17777413 aatcacaagaggagaaaagtggctgtcacctaagttgtctaatattagatgtacaaatatcactcctc 17777346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 3904293 - 3904365
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    |||||||||||||||||||||| ||| ||||| |||| ||||||||| |||| ||||||||||||| ||||||    
T  3904293 gtccaatcacaagaggagaaaattggttgtcatcaaaattgtctaattttagttgtacaaatatcactcctct 3904365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 35883681 - 35883612
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||| | |||| ||||||||||||||||||| | | ||||||||| ||||    
T  35883681 taagagaaatgatatttgtacaattattttttgacaacttttgaaacaaccatatctctcatactcacat 35883612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 1523252 - 1523187
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 339  Q
    |||||||||| | ||||||||||||| ||||| |||| | |||||||||||| |||||||||||||    
T  1523252 gtccaatcactacaggagaaaagtggttgtcatcaaaatcgtctaatattagttgtacaaatatca 1523187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 2279283 - 2279218
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 339  Q
    |||||||||||||||||||||| ||  ||||||||||||||| |||||||||   |||||||||||    
T  2279283 gtccaatcacaagaggagaaaaatgattgtcaccaaagttgtataatattagtgatacaaatatca 2279218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 1922495 - 1922427
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 233  Q
    |||||||||||||||||||||| |||| || || |||||  |||||||||| ||||||||| |||||||    
T  1922495 agaaatgatatttgtacaatcactttttgataatttttgtgacaaccctctctctcatactcacatatg 1922427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 3672341 - 3672406
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||| ||||||||| |||||||||||  ||||  |||||||||||||| ||||    
T  3672341 gagaaatgatatttgtaccatcaatttttgacaacttttgtgacaa-tctctatctcatactcacat 3672406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 33694275 - 33694221
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 215  Q
    |||||||||||||||||||||||||| ||||  ||||||||| ||||||| ||||    
T  33694275 taagagaaatgatatttgtacaatcactttttaacaacttttaaaacaactctct 33694221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 40809498 - 40809559
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatactta 227  Q
    |||||||||||||||||||| | || | ||||||||||||||||||| ||| |||||||||||    
T  40809498 agaaatgatatttgtacaat-acttattgacaacttttgaaacaaccatctctctcatactta 40809559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 4466693 - 4466760
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||| || |||| ||||||||||| ||||||  ||| ||||||| ||||||    
T  4466693 aagagaaatgatatttgtacaaccagtttt-gacaacttttgtaacaactttctgtctcatatttacat 4466760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 38520066 - 38520018
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 210  Q
    ||||||||| ||||||||||||||| | || ||||||||||||||||||    
T  38520066 aagagaaataatatttgtacaatcattatttgacaacttttgaaacaac 38520018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 29362763 - 29362724
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  29362763 gagaaatgatatttgtacaatcaatttatgacaacttttg 29362724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 12022008 - 12021958
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccc 212  Q
    ||||||||||||| || |||||| | |||| ||||||||||||||||||||    
T  12022008 aagagaaatgatacttttacaattactttttgacaacttttgaaacaaccc 12021958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 17526415 - 17526465
Alignment:
Q  160 ctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 210  Q
    |||||||||||||||||||||||||||  ||| ||||| |||| |||||||    
T  17526415 ctaagagaaatgatatttgtacaatcatattttgacaattttttaaacaac 17526465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 40238438 - 40238476
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  40238438 gagaaatgatatttgtacaatcattttttgacaactttt 40238476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 50528128 - 50528090
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  50528128 gagaaatgatatttgtacaatcaatttgtgacaactttt 50528090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 1523364 - 1523299
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||| || |||| || ||||||||||| |||  ||| | ||||||||||||    
T  1523364 agaaatgatatttgtacaaccactttttgataacttttgaaataactatctctgtcatacttacat 1523299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 3558847 - 3558884
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  3558847 agaaatgatatttatacaatcaatttttgacaactttt 3558884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 5574329 - 5574265
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||| ||||  ||||||||||  |||||| ||| ||||||||| ||||    
T  5574329 agaaatgatatttgtacaatcatttttgtacaacttttg-tacaaccttctctctcatactcacat 5574265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 9987949 - 9987990
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||| |||| ||||||| |||||||||||    
T  9987949 aagagaaatgatatttgaacaaccaatttttgacaacttttg 9987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 11947792 - 11947861
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||| || |||  |||||||||||  |||||  ||| ||||||||| ||||    
T  11947792 taagagaaatgatatttgtacaaccattttatgacaacttttgtgacaactttctctctcatactgacat 11947861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 35369697 - 35369765
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||| |||||| |||||  ||||||||||  |||||  ||||||||||||| ||||    
T  35369697 taagagaaatgatatttgaacaatc-attttttacaacttttgtgacaactttctatctcatactcacat 35369765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 36669444 - 36669415
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattt 190  Q
    ||||||||||||||||||||||||||||||    
T  36669444 taagagaaatgatatttgtacaatcaattt 36669415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 6829863 - 6829815
Alignment:
Q  155 tttagctaagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||| |||||||||||||||||||||||  |||||  |||||||||||    
T  6829863 tttagttaagagaaatgatatttgtacaactaatttgtgacaacttttg 6829815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 25130706 - 25130742
Alignment:
Q  167 aaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||||||  |||||||||||    
T  25130706 aaatgatatttgtacaatcaatttgtgacaacttttg 25130742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 30535989 - 30536057
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||||| ||||  |||| |||||  |||||  ||| ||||||||| ||||    
T  30535989 aagagaaatgatatttgtacaatcattttttaacaatttttgtgacaactttctctctcatactcacat 30536057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 42577470 - 42577514
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaa 206  Q
    |||||||||||||||||||||||||  |||  |||||||||||||    
T  42577470 aagagaaatgatatttgtacaatcacattttaacaacttttgaaa 42577514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 44672103 - 44672063
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||||| ||||  |||||||||    
T  44672103 aagagaaatgatatttgtacaatcattttttaacaactttt 44672063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 48858821 - 48858889
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  48858821 aagagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatactcacat 48858889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 48872377 - 48872444
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||| || |||  |||||||||| | |||||| ||| ||||||||| ||||    
T  48872377 aagagaaatgatatttgtacaaccactttatgacaactttt-agacaaccttctctctcatactcacat 48872444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 48983741 - 48983673
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  48983741 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 48983673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 844144 - 844217
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctctt 347  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  844144 gtccaatcacaaaaggagaaaagtgattgtcaccaaagttgtctaatattagttgtacaaatatcactcctctt 844217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 43057546 - 43057617
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 345  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||    
T  43057546 gtccaatcccaagaggagaaaagtggttgtcaccaaggttgtctaatattagttgtacaaatatcactcctc 43057617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 6968672 - 6968604
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatc 342  Q
    |||||||||||| || ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  6968672 gtccaatcacaatagaagaaaggtggttgtcaccaaagttgtctaatattagttgtacaaatatcaatc 6968604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 34270297 - 34270226
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 345  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||| || ||| |||||| |||||    
T  34270297 gtccaatcacaataggagaaaagtggttgtcaccaaagttgtctaatattagttgcacatatatcattcctc 34270226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 11148508 - 11148577
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||||  ||| ||||||||| ||||    
T  11148508 taagagaaatgatatttgtacaatcaatttttgacaacttttgtgacaacattctctctcatactcacat 11148577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 8728652 - 8728596
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 220  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||    
T  8728652 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctc 8728596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 26754709 - 26754643
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||| ||| ||| ||||||||| || |||||||||| ||||||||| ||||    
T  26754709 gagaaatgatatttgtacaaccaaattttgacaactttggagacaaccctctctctcatactcacat 26754643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 41621999 - 41621933
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||   | ||||||||||||||    
T  41621999 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccacatctctcatacttacat 41621933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 43057434 - 43057504
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 233  Q
    ||||||||||||||||||||| || |||| |||||||||||||| ||| | || ||||||||| |||||||    
T  43057434 agagaaatgatatttgtacaaccactttttgacaacttttgaaataactccctctctcatactcacatatg 43057504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 30838439 - 30838370
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||   | |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  30838439 taagagaaatgatatttgtacatctactttttgacaacttttgaaacaaccatctctctcatactcacat 30838370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 2629818 - 2629874
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 220  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||| ||| ||||    
T  2629818 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaaccttctctctc 2629874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 4719650 - 4719716
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||| ||||||| |||||||||||  |||||| | | ||||||||| ||||    
T  4719650 gagaaatgatatttgtacaaccaatttttgacaacttttgtgacaaccttttctctcatactcacat 4719716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 35570813 - 35570879
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||| || ||| || ||||||| | |||||||||| ||||||||| ||||    
T  35570813 gagaaatgatatttgtacaattaaattttgataactttttagacaaccctctctctcatactcacat 35570879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 3109658 - 3109597
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    |||||||||||||||||||||||||||  |||||||||||  |||||  ||| |||||||||    
T  3109658 gagaaatgatatttgtacaatcaatttgtgacaacttttgtgacaacattctctctcatact 3109597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 844035 - 844081
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaa 209  Q
    |||||||||||||||| |||| || |||| |||||||||||||||||    
T  844035 agagaaatgatatttgcacaaccattttttgacaacttttgaaacaa 844081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 17063865 - 17063903
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  17063865 gagaaatgatatttgtacaatcattttttgacaactttt 17063903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 32634705 - 32634747
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||| |  |||||||||||    
T  32634705 taagagaaatgatatttgtacaatcaatctgtgacaacttttg 32634747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 34270590 - 34270544
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaa 209  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||    
T  34270590 agagaaatgatatttgtacaacaaatttttaacaacttttgaaacaa 34270544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 15004795 - 15004734
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    ||||||||||||||| |||| || |||| ||||| ||||||||||| | ||| |||||||||    
T  15004795 gagaaatgatatttggacaaccactttttgacaatttttgaaacaatcatctctctcatact 15004734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 27440479 - 27440520
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaa 205  Q
    ||||||||||||||||||||||| |||  |||||||||||||    
T  27440479 gagaaatgatatttgtacaatcattttgtgacaacttttgaa 27440520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 27487885 - 27487926
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||| ||||||||||||  ||||||||||    
T  27487885 aagagaaatgatatttgaacaatcaatttttaacaacttttg 27487926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 34674868 - 34674917
Alignment:
Q  176 ttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    |||||||| || ||||||||||||||| |||||||| ||| |||||||||    
T  34674868 ttgtacaaccacttttcgacaacttttaaaacaaccatctttctcatact 34674917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 611862 - 611930
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||| ||||| | |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  611862 aagagaaatgatatttgaacaattactttttgacaacttttgtgacaactttctctctcatactcacat 611930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 6964443 - 6964415
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattt 190  Q
    |||||||||||||||||||||||||||||    
T  6964443 aagagaaatgatatttgtacaatcaattt 6964415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 9594477 - 9594517
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  9594477 agagaaatgatatttgtacaaccaatttgtgacaacttttg 9594517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 12401190 - 12401218
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattt 190  Q
    |||||||||||||||||||||||||||||    
T  12401190 aagagaaatgatatttgtacaatcaattt 12401218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 14126413 - 14126476
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    |||| ||||||||||||||||||||||||||   |||||||| | |||||| ||| |||||||||    
T  14126413 taagggaaatgatatttgtacaatcaattttatgcaactttt-atacaaccttctctctcatact 14126476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 29471991 - 29471921
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 344  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||| ||||    
T  29471991 gtccaatcacaagaggagaaaagtggttgtcaacaaagttgtataatattagttgtacaaatatcactcct 29471921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 40874221 - 40874149
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    |||||||||||||||||||||| |   ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  40874221 gtccaatcacaagaggagaaaaataattgtcaccaaagttgtctaatattagttgtacaaatatcactcctct 40874149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 24727380 - 24727310
Alignment:
Q  275 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 345  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||| |||||| |||||    
T  24727380 tccaatcacaagaggagaaaaatgtctgtcatcaaagttgtctaatattagttgtacatatatcactcctc 24727310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 43820813 - 43820744
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatat 232  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||| ||| ||||||||| ||||||    
T  43820813 agagaaatgatatttgtacaatcatttttttacaacttttgaaacaaccatctttctcatactcacatat 43820744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 22966784 - 22966845
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 223  Q
    |||||||||||||||||||||| || |||| || |||||||||||||||||||| |||||||    
T  22966784 aagagaaatgatatttgtacaaccactttttgataacttttgaaacaaccctctctctcata 22966845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 24727661 - 24727592
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 233  Q
    |||||||||||||||||||| || |||| |||||||||||||||||| |||| ||||||| | |||||||    
T  24727661 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaacactctctctcatattcacatatg 24727592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 15123891 - 15123827
Alignment:
Q  275 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 339  Q
    |||||||| |||||||||||||||| |||||||||| || || |||||||| |||||||||||||    
T  15123891 tccaatcataagaggagaaaagtggttgtcaccaaaattatcaaatattagttgtacaaatatca 15123827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 25507255 - 25507311
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 220  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||    
T  25507255 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctc 25507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 29472103 - 29472036
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||||| || ||||||||| ||||    
T  29472103 aagagaaatgatatttgtaaaatcactttt-gacaacttttgaaacaaccccctctctcatactcacat 29472036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 13454027 - 13453960
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||  |||| ||||||||| ||||    
T  13454027 agagaaatgatatctgtacaatcactttttgacaacttttgaaacaattctctctctcatactcacat 13453960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 40106608 - 40106675
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||| || | || |||||||| |||||||||| ||| ||||||||||||||    
T  40106608 agagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccatctctctcatacttacat 40106675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 10099411 - 10099341
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 344  Q
    ||||||||||||| |||||||| ||  ||||| |||||||||||||| |||| ||||||||||||| ||||    
T  10099411 gtccaatcacaaggggagaaaattgattgtcatcaaagttgtctaattttagttgtacaaatatcattcct 10099341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 40874332 - 40874263
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 233  Q
    |||||||||||||||||||| || ||||  |||||||||||||||||| | | ||||||||| |||||||    
T  40874332 gagaaatgatatttgtacaaccattttttaacaacttttgaaacaaccatgtctctcatactcacatatg 40874263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 31227622 - 31227570
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 215  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||| ||||    
T  31227622 agagaaatgatatgtgtacaatcactttttgacaacttttgaaacaactctct 31227570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 10041390 - 10041320
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 344  Q
    ||||||||||||| |||||||| ||  ||||| |||||||||||| | |||| ||||||||||||| ||||    
T  10041390 gtccaatcacaaggggagaaaattgattgtcatcaaagttgtctacttttagttgtacaaatatcattcct 10041320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 15124007 - 15123941
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||| || |||| ||||||||||||||||| | | | ||||||||| ||||    
T  15124007 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaatcatatctctcatactcacat 15123941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 40602458 - 40602392
Alignment:
Q  167 aaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 233  Q
    ||||||||||||||||| || |||| |||||||| | || ||||| ||||||||||||| |||||||    
T  40602458 aaatgatatttgtacaaccactttttgacaacttataaagcaaccttctatctcatactcacatatg 40602392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 9432175 - 9432110
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 339  Q
    ||||||||| |||||||||||| | | ||||| ||||||||| |||| |||| |||||||||||||    
T  9432175 gtccaatcataagaggagaaaattagttgtcatcaaagttgtttaattttagttgtacaaatatca 9432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 27307304 - 27307263
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  27307304 aagagaaatgatatttgtacaatcaatttgtgacaacttttg 27307263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 1352386 - 1352426
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  1352386 aagagaaatgatatttgaacaatcaatttttgacaactttt 1352426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 37767838 - 37767778
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 223  Q
    ||||||||||||||| ||||| || |||| ||||||||||||||||| | ||| |||||||    
T  37767838 agagaaatgatatttatacaaccactttttgacaacttttgaaacaatcatctctctcata 37767778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 45376292 - 45376236
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 220  Q
    |||||||||||||||||||| || |||| |||||||||||  |||||||||| ||||    
T  45376292 gagaaatgatatttgtacaaccactttttgacaacttttgtgacaaccctctctctc 45376236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 3196158 - 3196119
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  3196158 gagaaatgatatttgtacaatcaatttgtgacaacttttg 3196119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 7258634 - 7258567
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||| ||||||||||||| | || ||||||||||| |||||   ||| ||||||||||||||    
T  7258634 agagaaatgacatttgtacaatcactctttgacaacttttgtaacaattttctctctcatacttacat 7258567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 19695753 - 19695714
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  19695753 aagagaaatgatatttgtacaatcactttttgacaacttt 19695714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 34141439 - 34141501
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 224  Q
    |||||||||||||||||||||||||| ||||  ||||||||||  |||||| ||| ||||||||    
T  34141439 taagagaaatgatatttgtacaatcatttttgtacaacttttg-tacaaccttctctctcatac 34141501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 9979092 - 9979162
Alignment:
Q  160 ctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||| || ||||  |||| |||||  |||||| ||| ||||||||| ||||    
T  9979092 ctaagagaaatgatatttgtacaaccactttttcacaatttttgtgacaaccatctctctcatactcacat 9979162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 29168722 - 29168764
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||||| || |||| |||||||||||    
T  29168722 taagagaaatgatatttgtacaaccattttttgacaacttttg 29168764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 30416360 - 30416402
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaa 206  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||    
T  30416360 gagaaatgatatttgtacaatcattttttgacaatttttgaaa 30416402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 31629604 - 31629670
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||  | |||| ||||||||||| ||||||| ||| ||| ||||| ||||    
T  31629604 gagaaatgatatttgtacaactactttttgacaacttttggaacaaccatctctctaatactcacat 31629670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 42821370 - 42821412
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  42821370 taagagaaattatatttgtacaatcatttttcgacaatttttg 42821412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 14151705 - 14151652
Alignment:
Q  291 gaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 344  Q
    ||||||||| |||||  |||||||||||| ||||| ||||||||||||| ||||    
T  14151705 gaaaagtggttgtcaaaaaagttgtctaagattagttgtacaaatatcattcct 14151652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 15610890 - 15610837
Alignment:
Q  177 tgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||| || |||| ||||||||||||||||||||||| | ||||||| ||||    
T  15610890 tgtacaaccattttttgacaacttttgaaacaaccctctctatcatactcacat 15610837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 5031920 - 5031992
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 233  Q
    ||||||||||||||||||||||| || |||   ||||||||||  |||||  ||| ||||||||| |||||||    
T  5031920 taagagaaatgatatttgtacaaccattttgtaacaacttttgcgacaactttctctctcatactcacatatg 5031992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 15260307 - 15260367
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 224  Q
    ||||||||||||||| |||| || |||| |||||||||||  ||||| |||| ||||||||    
T  15260307 gagaaatgatatttgaacaaccacttttagacaacttttgtgacaactctctctctcatac 15260367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 29871426 - 29871382
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaa 205  Q
    |||||||||||||||||||||||| | |||  |||||||||||||    
T  29871426 taagagaaatgatatttgtacaattagtttatgacaacttttgaa 29871382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 31415287 - 31415239
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaacc 211  Q
    |||||||||||||||||||  | | |||| |||||||||||||||||||    
T  31415287 agagaaatgatatttgtacgtttactttttgacaacttttgaaacaacc 31415239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 39285854 - 39285890
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    |||||||||||||||||||||| |||| |||||||||    
T  39285854 agaaatgatatttgtacaatcactttttgacaacttt 39285890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 41353570 - 41353542
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattt 190  Q
    |||||||||||||||||||||||||||||    
T  41353570 aagagaaatgatatttgtacaatcaattt 41353542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 44050013 - 44050081
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||| |||||||| || |||  |||||||||||  |||||| ||| ||||||||| ||||    
T  44050013 aagagaaatgatacttgtacaaccattttatgacaacttttgtgacaaccttctctctcatactcacat 44050081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 26629184 - 26629115
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||| ||||    
T  26629184 taagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctcatactcacat 26629115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 37379398 - 37379333
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 339  Q
    |||||||||||||||||||||| | | |||||||||||| |||||||||||| |||||||||||||    
T  37379398 gtccaatcacaagaggagaaaaatagttgtcaccaaagtcgtctaatattagttgtacaaatatca 37379333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 30170802 - 30170734
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||| || |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  30170802 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccatctctctcatactcacat 30170734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 30170692 - 30170627
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 339  Q
    |||||||||||| ||||||||| ||| |||||||||| |||||||| ||||| |||||||||||||    
T  30170692 gtccaatcacaaaaggagaaaaatggttgtcaccaaaattgtctaaaattagttgtacaaatatca 30170627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 8835941 - 8835890
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 215  Q
    |||||||||||||||||| |||| |||| |||||||||| ||||||||||||    
T  8835941 gagaaatgatatttgtacgatcactttttgacaacttttaaaacaaccctct 8835890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 37379501 - 37379439
Alignment:
Q  168 aatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||| || || |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  37379501 aatgatatttgtagaaccactttttgacaacttttgaaacaaccatctctctcatactcacat 37379439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 43066668 - 43066606
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 223  Q
    ||||||||||||||||||||||| || ||||  |||||||||||||||| | ||| |||||||    
T  43066668 taagagaaatgatatttgtacaaccactttttaacaacttttgaaacaatcatctctctcata 43066606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 13592763 - 13592832
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||   | |||| |||||||||||||||||| || | ||||||||| ||||    
T  13592763 taagagaaatgatatttgtacacctattttttgacaacttttgaaacaactctatctctcatactcacat 13592832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 42652501 - 42652564
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatactta 227  Q
    ||||||||||||||||||||| || ||| |||||||||| | |||||  ||| |||||||||||    
T  42652501 gagaaatgatatttgtacaattaaattttgacaacttttaagacaactttctctctcatactta 42652564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 4721729 - 4721795
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||| ||| ||| ||||||||| || |||||| | | ||||||||| ||||    
T  4721729 gagaaatgatatttgtacaaccaaattttgacaactttggatacaaccttttctctcatactcacat 4721795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 7376503 - 7376572
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacata 231  Q
    ||||||||||||||||||||||| ||||||   |||||||||| ||||||  ||| ||||||||| |||||    
T  7376503 taagagaaatgatatttgtacaaccaatttctaacaacttttg-aacaactttctctctcatactcacata 7376572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 39719323 - 39719281
Alignment:
Q  160 ctaagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    |||| ||||||||||||||||||||||||||  ||||||||||    
T  39719323 ctaaaagaaatgatatttgtacaatcaatttgtgacaactttt 39719281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 41273512 - 41273554
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||||| ||||||  |||||||||||    
T  41273512 taagagaaatgatatttgtacaaacaatttgtgacaacttttg 41273554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 2731034 - 2730973
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 223  Q
    ||||||||||||||||| |||| || |||| ||||||||||| ||||||  ||| |||||||    
T  2731034 aagagaaatgatatttgaacaaccactttttgacaacttttgtaacaactttctctctcata 2730973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 5740848 - 5740807
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||| || |||| ||||||||||    
T  5740848 taagagaaatgatatttgtacaaccactttttgacaactttt 5740807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 5772045 - 5771992
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 215  Q
    ||||||||||||||||| |||| || |||| ||||||||||| |||||| ||||    
T  5772045 aagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactctct 5771992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 13884231 - 13884194
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  13884231 gagaaatgatatttgtacaatcattttttgacaacttt 13884194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 20288531 - 20288572
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  20288531 aagagaaatgatatttgtacaaccaatttgtgacaacttttg 20288572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 20996220 - 20996179
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||||||| ||||  ||||||||||    
T  20996220 aagagaaatgatatttgtacaatcatttttgaacaacttttg 20996179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 21075160 - 21075201
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  21075160 aagagaaatgatatttgtacaaccaatttgtgacaacttttg 21075201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 14127250 - 14127310
Alignment:
Q  170 tgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||| || |||| ||||| ||||| ||||||| ||| ||||||||| ||||    
T  14127250 tgatatttgtacaaccactttttgacaatttttggaacaaccatctctctcatactcacat 14127310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 33817154 - 33817182
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattt 190  Q
    |||||||||||||||||||||||||||||    
T  33817154 aagagaaatgatatttgtacaatcaattt 33817182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 35701901 - 35701838
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    ||||||||||||||||||||||| || ||||  ||||||||||  |||||| ||| |||||||||    
T  35701901 taagagaaatgatatttgtacaaccatttttgtacaacttttg-tacaaccttctctctcatact 35701838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 36064029 - 36064069
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  36064029 agagaaatgatatttgtacaatcattttgtgacaacttttg 36064069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 37392191 - 37392151
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    ||||||||||||||||||||||| || |||| |||||||||    
T  37392191 taagagaaatgatatttgtacaaccattttttgacaacttt 37392151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 44010804 - 44010832
Alignment:
Q  163 agagaaatgatatttgtacaatcaatttt 191  Q
    |||||||||||||||||||||||||||||    
T  44010804 agagaaatgatatttgtacaatcaatttt 44010832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 274 - 346
Target Start/End: Complemental strand, 54222017 - 54221945
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    ||||||||||||||| |||||| | | ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  54222017 gtccaatcacaagagaagaaaaatagttgtcaccaaagttgtctaatattagttgtacaaatatcactcctct 54221945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 35206280 - 35206342
Alignment:
Q  275 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatat 337  Q
    ||||||||||||||||||||||||| | |||||| |||||||| ||||||| |||||||||||    
T  35206280 tccaatcacaagaggagaaaagtggttatcaccatagttgtctgatattagttgtacaaatat 35206342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 45652765 - 45652817
Alignment:
Q  290 agaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatc 342  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  45652765 agaaaagtggttatcatcaaagttgtctaatattagatgtacaaatatcaatc 45652817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 10762462 - 10762411
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattag 325  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  10762462 gtccaatcccaagaggagaaaagtggttgtcaccaaggttgtctaatattag 10762411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 961274 - 961342
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||| ||||||||||||| | |||| || ||||||||||||||| |||| ||||||||| ||||    
T  961274 aagagaaataatatttgtacaataattttttgataacttttgaaacaactctctctctcatactcacat 961342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 17367446 - 17367506
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    ||||||||||||| ||||| || |||| ||||||||||||||||||| ||| |||||||||    
T  17367446 agaaatgatatttatacaaccactttttgacaacttttgaaacaaccatctctctcatact 17367506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 31221411 - 31221478
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||  ||| ||||||||||||||    
T  31221411 aagagaaatgatatttgtacaatcaatttgtgacaactttt-atacaactttctctctcatacttacat 31221478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 35206166 - 35206234
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||| |||||||||||| |||| || ||||||||||||||| |||| ||| ||||| ||||    
T  35206166 aagagaaatgatgtttgtacaatcactttttgataacttttgaaacaactctctctcttatactcacat 35206234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 9032780 - 9032845
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||||||  |||||||||||  |||||  ||| ||||||||||||||    
T  9032780 gagaaatgatatttgtacaatcaatttgtgacaacttttg-tacaactttctctctcatacttacat 9032845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 40693694 - 40693628
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||| |||||| |||||| ||||| |||||| |||||| ||| ||||||||| ||||    
T  40693694 gagaaatgatatttatacaattaatttttgacaatttttgagacaaccttctctctcatactcacat 40693628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 45652661 - 45652707
Alignment:
Q  184 tcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  45652661 tcaatttttgacaacttttgaaacaaacctctatctcatactcacat 45652707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 52372263 - 52372197
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||| |||||| || ||||||||||| |||  |||||||| |||| ||||    
T  52372263 gagaaatgatatttgtacaattaatttttgataacttttgaaataactatctatctcttactcacat 52372197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 56215605 - 56215671
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||| || |||| ||||||||||||| ||| | ||| ||||||||| ||||    
T  56215605 gagaaatgatatttgtacaaccactttttgacaacttttgaaccaatcatctctctcatactcacat 56215671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 961387 - 961452
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 339  Q
    |||||||||||| |||| |||||||  | |||||||| |||| ||||||||| |||||||||||||    
T  961387 gtccaatcacaaaaggaaaaaagtgattatcaccaaaattgtttaatattagttgtacaaatatca 961452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 3222987 - 3223028
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  3222987 aagagaaatgatatttgtacaatcaatttgtgacaacttttg 3223028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 5208408 - 5208359
Alignment:
Q  154 ttttagctaagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||| |||||||||||||||||||||| ||||||  |||||||||||    
T  5208408 ttttagcaaagagaaatgatatttgtacaaccaatttgtgacaacttttg 5208359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 7632535 - 7632494
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  7632535 aagagaaatgatatttgaacaatcaatttttgacaacttttg 7632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 44368275 - 44368234
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  44368275 aagagaaatgatatttgtacaatcaatttgtgacaacttttg 44368234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 15638160 - 15638200
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  15638160 agagaaatgatatttgtacaatcattttttgacaacttttg 15638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 50291280 - 50291347
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||||| ||||  ||||||||| | |||||| ||| ||||||||| ||||    
T  50291280 aagagaaatgatatttgtacaatcatttttgtacaactttt-atacaaccttctctctcatactcacat 50291347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 50831829 - 50831781
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 210  Q
    |||||||||||||||||||||| || |||| ||||||||||| ||||||    
T  50831829 aagagaaatgatatttgtacaaccactttttgacaacttttgtaacaac 50831781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 5903178 - 5903241
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatat 337  Q
    |||||||||||||||||||||| ||| |||||| | |||| ||||||| ||  |||||||||||    
T  5903178 gtccaatcacaagaggagaaaaatggttgtcactagagttatctaataataattgtacaaatat 5903241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 21685937 - 21685976
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  21685937 agagaaatgatatttgtaaaatcaatttttgacaactttt 21685976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 45511446 - 45511501
Alignment:
Q  291 gaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 346  Q
    ||||||||| |||||| |||||||| ||| ||| ||||||||||||||| ||||||    
T  45511446 gaaaagtggatgtcacaaaagttgtttaaaattggatgtacaaatatcactcctct 45511501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 8026827 - 8026785
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||| ||||||||||||  |||||||||||    
T  8026827 taagagaaatgatatttatacaatcaatttgtgacaacttttg 8026785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 24045244 - 24045310
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||| |||| |||||||  ||||||||||  |||||| ||| ||||||||| ||||    
T  24045244 gagaaatgatatttgcacaaccaattttttacaacttttgcgacaaccttctctctcatactcacat 24045310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 24235317 - 24235359
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||||||||||||  ||||| |||||    
T  24235317 taagagaaatgatatttgtacaatcaatttgtgacaatttttg 24235359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 42915291 - 42915253
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  42915291 agagaaatgatatttgtacaatcactttttgacaacttt 42915253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 52832851 - 52832925
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcttt 348  Q
    ||||||||||||||| |||||| | | | ||| |||||||||||||| |||  |||||| |||||| ||||||||    
T  52832851 gtccaatcacaagagaagaaaattagttatcatcaaagttgtctaattttatttgtacagatatcactcctcttt 52832925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 3078979 - 3078910
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 233  Q
    ||||||||||||||||||||||| |||   ||||||||||  |||||  ||| ||||||||| |||||||    
T  3078979 gagaaatgatatttgtacaatcattttgtaacaacttttgtgacaactttctctctcatactcacatatg 3078910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 9162063 - 9162104
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    |||||||||||||||||||||||||| |||  ||||||||||    
T  9162063 taagagaaatgatatttgtacaatcattttgtgacaactttt 9162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 12387725 - 12387688
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  12387725 gagaaatgatatttgtacaatcattttttgacaacttt 12387688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 37727117 - 37727088
Alignment:
Q  162 aagagaaatgatatttgtacaatcaatttt 191  Q
    ||||||||||||||||||||||||||||||    
T  37727117 aagagaaatgatatttgtacaatcaatttt 37727088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 40760074 - 40760139
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||| ||| ||| |||||| ||||| ||||||||||||||||| |||| |||| ||| ||||||    
T  40760074 agaaataatacttgaacaatctatttttgacaacttttgaaacaatcctcaatcttatatttacat 40760139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 50890147 - 50890079
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||| | ||||| |||||||||||  |||||  ||| ||||||||| ||||    
T  50890147 taagagaaatgatatttgtacaa-ctatttttgacaacttttgtgacaactttctctctcatactcacat 50890079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 51255743 - 51255812
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  51255743 taagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 51255812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 53384401 - 53384372
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattt 190  Q
    ||||||||||||||||||||||||||||||    
T  53384401 taagagaaatgatatttgtacaatcaattt 53384372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 1796365 - 1796405
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  1796365 agagaaatgatatttgtacaaccaatttgtgacaacttttg 1796405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 8810571 - 8810631
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 224  Q
    |||||||||||||||||||| || |||   ||||||||||  |||||||||| ||||||||    
T  8810571 gagaaatgatatttgtacaaccattttcttacaacttttgggacaaccctctctctcatac 8810631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 31092394 - 31092434
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  31092394 agagaaatgatatttgtacaatcaatcttagaaaacttttg 31092434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 32012896 - 32012956
Alignment:
Q  164 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 224  Q
    ||||||||||||||| |||| ||||||| |||||||||||  |||||  ||| ||||||||    
T  32012896 gagaaatgatatttgaacaaccaatttttgacaacttttgtgacaactttctctctcatac 32012956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 44272883 - 44272816
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||||||||  | |||| |||||||||| |||||||  ||| ||||||||| ||||    
T  44272883 aagagaaatgatatttgtacaactattttttgacaactttt-aaacaactttctctctcatactcacat 44272816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 50721817 - 50721777
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    |||||||||||||||| |||| ||||||| |||||||||||    
T  50721817 agagaaatgatatttgaacaaccaatttttgacaacttttg 50721777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 51296262 - 51296222
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  51296262 aagagaaatgatatttgtacaatcactttatgacaactttt 51296222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 51377365 - 51377325
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  51377365 agagaaatgatatttgtacaaccaatttgtgacaacttttg 51377325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 55268073 - 55268033
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  55268073 agagaaatgatatttgtacaaccaatttgtgacaacttttg 55268033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 855 - 786
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||| ||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  855 taagaggaatgatatttgtacaatcattttttgacaacttttgaaacaaccatctctctcatactcacat 786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 38598 - 38662
Alignment:
Q  166 gaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||| ||| ||| ||||||||| ||||||||||||| ||||||||| ||||    
T  38598 gaaatgatatttgtacaaccaaattttgacaactttggaaacaaccctctctctcatactcacat 38662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 10840722 - 10840779
Alignment:
Q  168 aatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 225  Q
    ||||||||||||||||| | |||| ||||||||||| ||||| ||||| |||||||||    
T  10840722 aatgatatttgtacaattattttttgacaacttttggaacaatcctctctctcatact 10840779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 13093629 - 13093682
Alignment:
Q  167 aaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 220  Q
    ||||||||||||||||| || |||| |||||||||||||||||| |||| ||||    
T  13093629 aaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctctc 13093682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 31883378 - 31883329
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 210  Q
    ||||||||||||||||||||||| || |||| ||||||||||| ||||||    
T  31883378 taagagaaatgatatttgtacaaccactttttgacaacttttgtaacaac 31883329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 17551452 - 17551384
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||| |||| || |||| ||||||||||| ||||||  ||| ||||||||| ||||    
T  17551452 aagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacat 17551384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 20029259 - 20029327
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||| ||||||||||| ||||| || ||||  |||||||||||||||||| ||| ||||||||| ||||    
T  20029259 aagaaaaatgatatttatacaaccactttttaacaacttttgaaacaaccttctctctcatactcacat 20029327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 1196056 - 1196095
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  1196056 aagagaaatgatatttgtacaatcactttttgacaacttt 1196095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 3180065 - 3180026
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  3180065 aagagaaatgatatttgtacaatcattttttgacaacttt 3180026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 13093742 - 13093789
Alignment:
Q  277 caatcacaagaggagaaaagtggctgtcaccaaagttgtctaatatta 324  Q
    ||||||||| ||||||||||||| ||||||||||||| | ||||||||    
T  13093742 caatcacaaaaggagaaaagtggttgtcaccaaagttatttaatatta 13093789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 34792021 - 34792087
Alignment:
Q  163 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||||||||||||||||||||||| ||||  ||||||||||  |||||| ||| ||||||||| ||||    
T  34792021 agagaaatgatatttgtacaatcatttttgtacaacttttg-tacaaccttctctctcatactcacat 34792087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 8505847 - 8505806
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttg 203  Q
    ||||||||||||||||| ||||||| |||| |||||||||||    
T  8505847 aagagaaatgatatttgaacaatcattttttgacaacttttg 8505806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 31204883 - 31204822
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 223  Q
    |||||||||||||||| ||||| || |||| || ||||||||||| ||| |||| |||||||    
T  31204883 aagagaaatgatatttctacaaccattttttgataacttttgaaataactctctctctcata 31204822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 31517243 - 31517202
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||| || |||| ||||||||||    
T  31517243 taagagaaatgatatttgtacaaccactttttgacaactttt 31517202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 2242095 - 2242027
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||  |||||  ||| ||||||||| ||||    
T  2242095 aagagaaatgatatttgaacaatcattttttgacaatttttgtgacaactttctctctcatactcacat 2242027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 15722576 - 15722536
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaactttt 202  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  15722576 aagagaaatgatatttgtacaatcattttgtgacaactttt 15722536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 26554492 - 26554539
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaa 209  Q
    |||||| ||||||||| |||||||||||||| |||||||||||| ||||    
T  26554492 taagaggaatgatatt-gtacaatcaattttagacaacttttgagacaa 26554539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 33683498 - 33683566
Alignment:
Q  162 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 230  Q
    |||| ||||||||||| || | | | |||| ||||||||||||||| ||||||| ||||||||| ||||    
T  33683498 aagataaatgatatttatatatttattttttgacaacttttgaaactaccctctctctcatactcacat 33683566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 5680 - 5750
Alignment:
Q  274 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 344  Q
    ||||||||||||| |||||||| ||  ||||| |||||||||||| | |||| ||||||||||||| ||||    
T  5680 gtccaatcacaaggggagaaaattgattgtcatcaaagttgtctacttttagttgtacaaatatcattcct 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 15901 - 15851
Alignment:
Q  165 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 215  Q
    |||||| ||||||||||||| | |||| || ||||||||||||||||||||    
T  15901 agaaataatatttgtacaataattttttgataacttttgaaacaaccctct 15851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 31663 - 31623
Alignment:
Q  161 taagagaaatgatatttgtacaatcaattttcgacaacttt 201  Q
    ||||||||||||||||||||||| || |||| |||||||||    
T  31663 taagagaaatgatatttgtacaaccattttttgacaacttt 31623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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