View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13188_low_2 (Length: 380)

Name: NF13188_low_2
Description: NF13188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13188_low_2
NF13188_low_2
[»] chr1 (17 HSPs)
chr1 (17-365)||(27777539-27777885)
chr1 (28-365)||(27782085-27782422)
chr1 (29-141)||(38226776-38226888)
chr1 (172-239)||(27781318-27781385)
chr1 (244-313)||(38226961-38227030)
chr1 (250-307)||(17663585-17663642)
chr1 (274-330)||(27781061-27781117)
chr1 (27-118)||(17700129-17700220)
chr1 (274-329)||(27781179-27781234)
chr1 (247-307)||(21899127-21899187)
chr1 (274-330)||(27781100-27781156)
chr1 (250-300)||(17700337-17700387)
chr1 (274-319)||(27781150-27781195)
chr1 (35-106)||(17663772-17663843)
chr1 (106-149)||(27781396-27781439)
chr1 (260-315)||(38227049-38227104)
chr1 (34-118)||(21898914-21898997)
[»] chr4 (3 HSPs)
chr4 (35-313)||(35249931-35250217)
chr4 (247-307)||(51220007-51220067)
chr4 (248-307)||(51220795-51220854)
[»] chr7 (1 HSPs)
chr7 (247-313)||(440901-440967)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 27777885 - 27777539
Alignment:
Q  17 tcaaccctcaatttagtttcactcaaacaaaacaagaggattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagca 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27777885 tcaaccctcaatttagtttcactcaaacaaaacaagaagattaagacaaatgtaaaagatggaaattgataaactaaactttatatatatcttgtaagca 27777786  T
Q  117 aattgcttaataactcatgatgatatgctttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattca 216  Q
    ||||||| ||||| ||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777785 aattgctcaataattcatgatgatat--tttaactagaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattca 27777688  T
Q  217 aaatatcattcaaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatca 316  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27777687 taatatcattcaaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattcttcacatca 27777588  T
Q  317 tcacatggaagctcaaaattcatcacatcattacttggaagctcgttca 365  Q
    |||| || |||||||||||||||||||||||||||||||||||||||||    
T  27777587 tcacttgtaagctcaaaattcatcacatcattacttggaagctcgttca 27777539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 28 - 365
Target Start/End: Original strand, 27782085 - 27782422
Alignment:
Q  28 tttagtttcactcaaacaaaacaagaggattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaattgcttaat 127  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  27782085 tttagtttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcgaattgctcaat 27782184  T
Q  128 aactcatgatgatatgctttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcaaaatatcattc 227  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27782185 aattcatgatgatatactttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcataatatcattc 27782284  T
Q  228 aaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatcatcacatggaag 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||    
T  27782285 aaaatcattaaaccaagacgagacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcacatcatcacttgaaag 27782384  T
Q  328 ctcaaaattcatcacatcattacttggaagctcgttca 365  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27782385 ctcaaaattcatcacatcattacttggaagctcgttca 27782422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 38226776 - 38226888
Alignment:
Q  29 ttagtttcactcaaacaaaacaagaggattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaattgcttaata 128  Q
    ||||||| ||||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38226776 ttagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaata 38226875  T
Q  129 actcatgatgata 141  Q
    | |||||||||||    
T  38226876 attcatgatgata 38226888  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 27781385 - 27781318
Alignment:
Q  172 aaattacatgacaacatcaagggtattcatcccatacaaaattcaaaatatcattcaaaatcattaaa 239  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||    
T  27781385 aaattacatgacaacatcaagggtatccatcccataaaaaattcataatatcattcaaaatcattaaa 27781318  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 38226961 - 38227030
Alignment:
Q  244 gacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 313  Q
    |||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  38226961 gacgagacactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaattcttcaca 38227030  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 17663642 - 17663585
Alignment:
Q  250 acactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 307  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||    
T  17663642 acactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattc 17663585  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 27781117 - 27781061
Alignment:
Q  274 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacatggaagctc 330  Q
    |||||||||||||| |||||||||||| |||||||||| |||||||| |||||||||    
T  27781117 atcatcacttggaagctcgttcaaatcaaaattcttcatatcatcacttggaagctc 27781061  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 17700129 - 17700220
Alignment:
Q  27 atttagtttcactcaaacaaaacaagaggattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaa 118  Q
    |||||| ||||| |||||||||  ||| |||||||||||    ||||||||||||||||||| ||||| |||||||||||| ||| ||||||    
T  17700129 atttagattcacacaaacaaaattagaagattaagacaaccacaaaaggtggaaattgataatctaaaatttatatatatcgtgtcagcaaa 17700220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 27781234 - 27781179
Alignment:
Q  274 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacatggaagct 329  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||||    
T  27781234 atcatcaattggatactcgttcaaatcaaaattcttcacatcatcacttggaagct 27781179  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 21899127 - 21899187
Alignment:
Q  247 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 307  Q
    ||||||||||||||||||||||||| |||| ||||||| || ||| |||||||| ||||||    
T  21899127 gagacactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattc 21899187  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 27781156 - 27781100
Alignment:
Q  274 atcatcacttggaaactcgttcaaatctaaattcttcacatcatcacatggaagctc 330  Q
    ||||||| ||||| ||||||||||||| ||||||||| ||||||||| |||||||||    
T  27781156 atcatcaattggatactcgttcaaatcaaaattcttcgcatcatcacttggaagctc 27781100  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 17700337 - 17700387
Alignment:
Q  250 acactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatc 300  Q
    |||||||||| ||||||||||| ||||||||||||||| ||| ||||||||    
T  17700337 acactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatc 17700387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 27781195 - 27781150
Alignment:
Q  274 atcatcacttggaaactcgttcaaatctaaattcttcacatcatca 319  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||    
T  27781195 atcatcacttggaagcttgttcaaatcaaaattcttcacatcatca 27781150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 17663843 - 17663772
Alignment:
Q  35 tcactcaaacaaaacaagaggattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatat 106  Q
    |||| |||||||||  ||| ||||||||||||   |||||||||||||||| || ||||| |||||||||||    
T  17663843 tcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgaaaatctaaaatttatatatat 17663772  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 27781439 - 27781396
Alignment:
Q  106 tcttgtaagcaaattgcttaataactcatgatgatatgctttaa 149  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||    
T  27781439 tcttgtaagcaaattgctcaataattcatgatgatatactttaa 27781396  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 38227049 - 38227104
Alignment:
Q  260 gtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcacatc 315  Q
    |||||| |||||  ||||||||||||||  ||||||||||| ||||||||||||||    
T  38227049 gtttcaccttcattatcatcacttggaagttcgttcaaatcaaaattcttcacatc 38227104  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 21898914 - 21898997
Alignment:
Q  34 ttcactcaaacaaaacaagaggattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaa 118  Q
    ||||| |||||||||  ||| ||||||||||||   ||||||||||||||||| ||| ||| |||||||| ||| ||| ||||||    
T  21898914 ttcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgat-aaccaaaatttatataaatcgtgtcagcaaa 21898997  T

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Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 35 - 313
Target Start/End: Original strand, 35249931 - 35250217
Alignment:
Q  35 tcactcaaacaaaacaagaggattaagacaaaagtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcaaattgcttaataactcat 134  Q
    ||||||||||||||  ||| || ||||||||| |||||||||   ||||||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||    
T  35249931 tcactcaaacaaaattagaagactaagacaaatgtaaaaggtaataattgataatctaaactctatatatatgttgtaagcaaattgctcaataattcat 35250030  T
Q  135 gatgatatgctttaactaaaagaattgttattaaagaaaattacatgacaacatcaagggtattcatcccatacaaaattcaaaatatcattcaaaatca 234  Q
    ||||||||  ||||||||||  | ||   ||||| ||||||||||||| |||||||||||||||||||||| ||||||  || |||||||||||||||||    
T  35250031 gatgatat--tttaactaaacaacttccaattaaggaaaattacatgataacatcaagggtattcatcccacacaaaaaccataatatcattcaaaatca 35250128  T
Q  235 t----------taaaccaagacgagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 313  Q
    |          ||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  35250129 ttaaaaagatataaaccaagacgagacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaattcttcaca 35250217  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 51220007 - 51220067
Alignment:
Q  247 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 307  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||| ||||||    
T  51220007 gagacactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattc 51220067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 51220795 - 51220854
Alignment:
Q  248 agacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattc 307  Q
    |||||||| ||||||||||||||| || |||||||||||| ||||||||| || ||||||    
T  51220795 agacactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattc 51220854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 440901 - 440967
Alignment:
Q  247 gagacactaattggtttcatcttcacaatcatcacttggaaactcgttcaaatctaaattcttcaca 313  Q
    |||||||||||| |||||||||||| | ||||||||||||| |||||||||||| ||||||||||||    
T  440901 gagacactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatcaaaattcttcaca 440967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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