View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13188_low_3 (Length: 363)
Name: NF13188_low_3
Description: NF13188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13188_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 42082876 - 42083188
Alignment:
| Q |
11 |
caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtttcgag |
110 |
Q |
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| T |
42082876 |
caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggtaagttcattctgaatgtttcgag |
42082975 |
T |
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| Q |
111 |
ataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatgggtac |
210 |
Q |
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| T |
42082976 |
ataccgtatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagc--------- |
42083066 |
T |
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| Q |
211 |
taatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataa |
310 |
Q |
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| T |
42083067 |
-------------acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataa |
42083153 |
T |
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| Q |
311 |
taatttgaaaaatggaagaaattgaatgtaactac |
345 |
Q |
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| T |
42083154 |
taatttgaaaaatggaagaaattgaatgtaactac |
42083188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 42086356 - 42086611
Alignment:
| Q |
6 |
agtagcaaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtt |
105 |
Q |
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| T |
42086356 |
agtatcaaaaggaagataaccctcgtggttaggacaccaaggaaataaattatgcagaaacttcttg-cact--tttgtggcaagttgattctgaatgtg |
42086452 |
T |
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| Q |
106 |
tcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatg |
205 |
Q |
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| T |
42086453 |
ttgaggtaccacatcaaacatggctaattgcatagagtatgatgcacgaccctttgtcatccctcttagtgtactgacatactgaaacatctcagcaaga |
42086552 |
T |
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| Q |
206 |
ggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta |
270 |
Q |
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| T |
42086553 |
ggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta |
42086611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 42086665 - 42086715
Alignment:
| Q |
295 |
acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactac |
345 |
Q |
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| T |
42086665 |
acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactac |
42086715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 37603915 - 37603956
Alignment:
| Q |
300 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaa |
341 |
Q |
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| T |
37603915 |
gacaccgataacaatttgaaaaatggaagaaattgaatgtaa |
37603956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 22284533 - 22284496
Alignment:
| Q |
306 |
gataataatttgaaaaatggaagaaattgaatgtaact |
343 |
Q |
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| T |
22284533 |
gataataatttgaaaaatggaaaaatttgaatgtaact |
22284496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
| Q |
289 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta |
344 |
Q |
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| T |
6933139 |
actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta |
6933194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 30922528 - 30922573
Alignment:
| Q |
300 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactac |
345 |
Q |
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| T |
30922528 |
gacaatgataataattagaaaaatgcaataaattgaatgtaactac |
30922573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
| Q |
306 |
gataataatttgaaaaatggaagaaattgaatgtaac |
342 |
Q |
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||||||| ||||||||||||||| ||||||||||||| |
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| T |
19629033 |
gataatactttgaaaaatggaagtaattgaatgtaac |
19629069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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