View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13188_low_5 (Length: 299)
Name: NF13188_low_5
Description: NF13188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13188_low_5 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 28469071 - 28469335
Alignment:
| Q |
18 |
acataattatatgcatcaaagatggcaatatcagaacaaaatcattttaattggctatccactatgcatttgcaatactggcc-tctcttattaacttat |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |
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| T |
28469071 |
acataattatatgcatcaaagatggcagtatcagaacaaaattattttaattggctatcaactatgcatttgcaatactggccctctcttattaacttct |
28469170 |
T |
|
| Q |
117 |
tctgaaactattcatggagtaattgttgtgggaatggtttagagaaattatggaggtttgaatgatgggttgtttctacttggtttgtgtttatattgat |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28469171 |
tctaaaactattcatggagtaattgttgtgggaatggtttagagaaattatggcggtttgaatgatgggttgtttctacttagtttgtgtttatattgat |
28469270 |
T |
|
| Q |
217 |
atgtacggtgtagatctatggtagaaagctatgacatgttaattggcaattaatagggtagttgc |
281 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28469271 |
atgtacggtggagatctatggtagaaagctatggcatgttaattggcaattaatagggtagttgc |
28469335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 34734663 - 34734399
Alignment:
| Q |
18 |
acataattatatgcatcaaagatggcaatatcagaacaaaatcattttaattggctatccactatgcatttgcaatactggcc-tctcttattaacttat |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |
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| T |
34734663 |
acataattatatgcatcaaagatggcagtatcagaacaaaattattttaattggctatcaactatgcatttgcaatactggccctctcttattaacttct |
34734564 |
T |
|
| Q |
117 |
tctgaaactattcatggagtaattgttgtgggaatggtttagagaaattatggaggtttgaatgatgggttgtttctacttggtttgtgtttatattgat |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34734563 |
tctaaaactattcatggagtaattgttgtgggaatggtttagagaaattatggcggtttgaatgatgggttgtttctacttagtttgtgtttatattgat |
34734464 |
T |
|
| Q |
217 |
atgtacggtgtagatctatggtagaaagctatgacatgttaattggcaattaatagggtagttgc |
281 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34734463 |
atgtacggtggagatctatggtagaaagctatggcatgttaattggcaattaatagggtagttgc |
34734399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 75968 - 75704
Alignment:
| Q |
18 |
acataattatatgcatcaaagatggcaatatcagaacaaaatcattttaattggctatccactatgcatttgcaatactggcc-tctcttattaacttat |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |
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| T |
75968 |
acataattatatgcatcaaagatggcactatcagaacaaaatcattttaattggctatcaactatgcatttgcaatactggccctctcttattaacttct |
75869 |
T |
|
| Q |
117 |
tctgaaactattcatggagtaattgttgtgggaatggtttagagaaattatggaggtttgaatgatgggttgtttctacttggtttgtgtttatattgat |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
75868 |
tctaaaactattcatggagtaattgttgtgggaatggtttagagaaattatggcggtttgaatgatcggttgtttctacttggtttgtgtttatattgat |
75769 |
T |
|
| Q |
217 |
atgtacggtgtagatctatggtagaaagctatgacatgttaattggcaattaatagggtagttgc |
281 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |
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| T |
75768 |
atgtacggtggagatctatggtagaaagctatggcatgttagttgggaattaatagggtagttgc |
75704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 24966647 - 24966383
Alignment:
| Q |
18 |
acataattatatgcatcaaagatggcaatatcagaacaaaatcattttaattggctatccactatgcatttgcaatactggcc-tctcttattaacttat |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |
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| T |
24966647 |
acataattatatgcatcaaagatggcactatcagaacaaaatcattttaattggctatcaactatgcatttgcaatactggccctctcttattaacttct |
24966548 |
T |
|
| Q |
117 |
tctgaaactattcatggagtaattgttgtgggaatggtttagagaaattatggaggtttgaatgatgggttgtttctacttggtttgtgtttatattgat |
216 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24966547 |
tctaaaactattcatggagtaattgttgtgggaatggtttagagaaattatggcggtttgaatgatcggttgtttctacttggtttgtgtttatattgat |
24966448 |
T |
|
| Q |
217 |
atgtacggtgtagatctatggtagaaagctatgacatgttaattggcaattaatagggtagttgc |
281 |
Q |
| |
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|||||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |
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| T |
24966447 |
atgtacggtggagatctatggtagaaagctatggcatgttagttgggaattaatagggtagttgc |
24966383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 150 - 281
Target Start/End: Complemental strand, 29317995 - 29317864
Alignment:
| Q |
150 |
atggtttagagaaattatggaggtttgaatgatgggttgtttctacttggtttgtgtttatattgatatgtacggtgtagatctatggtagaaagctatg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29317995 |
atggtttagagaaattatggaggtttgaatgatgggttgtttctacttggtttgtgtttatattgatatgtacggtggagatctatggtagaaagctatg |
29317896 |
T |
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| Q |
250 |
acatgttaattggcaattaatagggtagttgc |
281 |
Q |
| |
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||||||||||||||||||||| ||||||||| |
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| T |
29317895 |
gcatgttaattggcaattaatatggtagttgc |
29317864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 29318552 - 29318429
Alignment:
| Q |
18 |
acataattatatgcatcaaagatggcaatatcagaacaaaatcattttaattggctatccactatgcatttgcaatactgg-cctctcttattaacttat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
29318552 |
acataattatatgcatcaaagatggcaatatcagaacaaaatcattttaattggctatccactatgcatttgcaatactggccctctcttattaacttct |
29318453 |
T |
|
| Q |
117 |
tctgaaactattcatggagtaatt |
140 |
Q |
| |
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||| |||||||||||||||||||| |
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|
| T |
29318452 |
tctaaaactattcatggagtaatt |
29318429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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