View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13189_low_2 (Length: 457)
Name: NF13189_low_2
Description: NF13189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13189_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 77 - 438
Target Start/End: Complemental strand, 43376706 - 43376336
Alignment:
| Q |
77 |
gttattagatgcatatcagtatcatgtcgatacaaacgtgattagatcaacaatgggtgctgcatagatgtaacacaagttacacatcatgagacttgga |
176 |
Q |
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| T |
43376706 |
gttattagatgcatatcagtatcatgtcgatacaaacgtgattagatcaacaatgggtgctacatagatgtaacacaagttacacatcatgagacttgga |
43376607 |
T |
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| Q |
177 |
aatgtaacaggttttgaagatcaattcatttcaagcaaattattttgaatcacaaaattgaatttttcaaaacaggggataacaagaacaaata------ |
270 |
Q |
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| T |
43376606 |
aatgtaacaggttttgaagatcactttatttcaagcaaattattttgaatcacaaaattgaatttttcaaaacaggggataacaagaacaaataacctta |
43376507 |
T |
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| Q |
271 |
---acctataaaaaattatttgttacaacagttatattcaaatatcaatagttattatggaattgaaagacacaaacnnnnnnntaataatgattttgtt |
367 |
Q |
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| T |
43376506 |
ataacctataaaaatttatttgttacaacagttatattcaaatatcaatagttattatggaattgaaagacacaaacaaaaaataaataatgattttgtt |
43376407 |
T |
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| Q |
368 |
acaaacatgaataagagagagggagatggagggtcttacttgtgatgataagaatgtgaaattgtaacagc |
438 |
Q |
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| T |
43376406 |
acaaacatgaataagagagagggagatggagggtcttacttgtgatgataagaatgtaaaattgtaacagc |
43376336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 43376744 - 43376708
Alignment:
| Q |
19 |
gacacagatgataatttgagaaaataaattaattgat |
55 |
Q |
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| T |
43376744 |
gacacggatgataatttgagaaaataaattaattgat |
43376708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 32102912 - 32102884
Alignment:
| Q |
26 |
atgataatttgagaaaataaattaattga |
54 |
Q |
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| T |
32102912 |
atgataatttgagaaaataaattaattga |
32102884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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