View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13189_low_3 (Length: 378)
Name: NF13189_low_3
Description: NF13189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13189_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 11948345 - 11948703
Alignment:
| Q |
9 |
gaagaatattagaagtcaatttatggaaccaataaatggaggcaaaccctcttaatcttttaacaat--acatattaagagattatctttnnnnnnnnta |
106 |
Q |
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| T |
11948345 |
gaagaatattagaagtcaatttatggaaccaataaatggaggcaaaccctatttatcttttaacaatgtacatattaagagattatctt-aaaaaaaata |
11948443 |
T |
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| Q |
107 |
catataattaagagattaacaatacatactatcactaaaacacatgatttgcttcaccttgaattgctgttaatctggcgtgctgtcatgcagtctgagc |
206 |
Q |
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| T |
11948444 |
catataattaagagattaacaatacatactatcactaaaacacatgatttgcttcaccttgaattgctgttaatctggcgtgcagtcatgcagtctgagc |
11948543 |
T |
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| Q |
207 |
gtctctcgttactatcactaaaacaccatactgcagaagtaatcccatcaatctcaaaaaccggcatcggcattattacatttcac----ccaaccaccc |
302 |
Q |
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| T |
11948544 |
gtctctcgttactatcactaaaacaccatactgcagaagtaatcccatcaatctcaaaaaccggcatcggcattattacatttcacccaaccaaccaccc |
11948643 |
T |
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| Q |
303 |
aatggcttcttcgaacacacagacagtgggacaatcactatttcgatggggctatatctg |
362 |
Q |
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| T |
11948644 |
aatggcttcttcgaacacacagacagtgggacaatcactatttcaatggggctatatctg |
11948703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 11935585 - 11935671
Alignment:
| Q |
9 |
gaagaatattagaagtcaatttatggaaccaataaatggaggcaaaccctcttaatcttttaacaatacatattaagagattatctt |
95 |
Q |
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||||||||| ||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||||| |
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| T |
11935585 |
gaagaatatcagaagtcaatttatgtaaccaataaagggaggcaaaccctgtttttcttttaacaataaatattaagagattatctt |
11935671 |
T |
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