View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13189_low_4 (Length: 372)
Name: NF13189_low_4
Description: NF13189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13189_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 15275901 - 15275561
Alignment:
| Q |
1 |
aaataattaaaatcaatataaaataatcatcaaaaccaaa-ggcatcatcttatgcaagaatgatgaacatcgcaagacataatgccattccaataaaaa |
99 |
Q |
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| T |
15275901 |
aaataattaaaatcaatataaaataatcatcaaaaccaaaaggcatcatcttatgcaagaatgatgaacatcgcaagacataaagccattccaataaaaa |
15275802 |
T |
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| Q |
100 |
ggccatcattctttatcacatttgttgtcacctgagcataaaaa-cgatcaccgaatttgtaggagaggtttaaggtacccttggatttccgagagcgtt |
198 |
Q |
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| T |
15275801 |
ggccatcattctttatcacatttgttgtcacctgagcataaaaaacgatcaccaaatttgtaggagaggtttaaggtacccttggatttccgagagcgtt |
15275702 |
T |
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| Q |
199 |
ttttcctaacctgataactgagttggaaaccggcattggcagggttatcaagaagtcccttgagagggatacggaccttgccaatggtactgcatgggag |
298 |
Q |
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| T |
15275701 |
ttttcctaacctgataactgagttggaaaccggcattggcagggttatcaagaagtcccttgagagggatacggaccttgccaatggtactgcatgggag |
15275602 |
T |
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| Q |
299 |
gaattttgggaggaattttcgataggagatgagtttgacttcaagagagagac |
351 |
Q |
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| T |
15275601 |
gaa------------ttttcgataggagatgagtttgacttcaagagagagac |
15275561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 15264112 - 15263960
Alignment:
| Q |
153 |
aatttgtaggagaggtttaaggtacccttggatttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcagggttatcaagaa |
252 |
Q |
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| T |
15264112 |
aatttgtaagagaggtttatggtacccttggatttcccagagcgttttttcctaacttgataactgaatggatgaccggcataggcagagttatcaagaa |
15264013 |
T |
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| Q |
253 |
gtcccttgagagggatacggaccttgccaatggtactgcatgggaggaatttt |
305 |
Q |
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| T |
15264012 |
gtcccaagagagggatacggaccttgccaatggtactgcgtgggaggaatttt |
15263960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 269
Target Start/End: Original strand, 27155665 - 27155791
Alignment:
| Q |
143 |
acgatcaccgaatttgtaggagaggtttaaggtacccttggatttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcaggg |
242 |
Q |
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||||||||| ||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||| |||||||||||| || ||| |||||| |
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| T |
27155665 |
acgatcaccaaatttgtaggagaggtttaagctacccctggatttgtgagagggttttttcctaacctggtaactgagttggtggccagcagcagcaggg |
27155764 |
T |
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| Q |
243 |
ttatcaagaagtcccttgagagggata |
269 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
27155765 |
ttatcaagaagttccttgagagggata |
27155791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 269
Target Start/End: Original strand, 12835802 - 12835921
Alignment:
| Q |
144 |
cgatcaccgaatttgtaggagaggtttaaggtacccttggatttccgagagcgttttttcctaacctgataactgagttggaaaccggcattggcagggt |
243 |
Q |
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|||||||||| ||||||||||||||| ||||| || |||||||| ||| | |||||||||||||||||||||||||| || |||||||| |
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| T |
12835802 |
cgatcaccgagtttgtaggagaggttcaaggtccctctggatttctctgagtttattttcctaacctgataactgagttggtggcc------ggcagggt |
12835895 |
T |
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| Q |
244 |
tatcaagaagtcccttgagagggata |
269 |
Q |
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|||||| |||| |||||||||||||| |
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| T |
12835896 |
tatcaaaaagttccttgagagggata |
12835921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 15251615 - 15251579
Alignment:
| Q |
145 |
gatcaccgaatttgtaggagaggtttaaggtaccctt |
181 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
15251615 |
gatcaccaaatttgtaggagaggtttaaggtaccctt |
15251579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 15251464 - 15251420
Alignment:
| Q |
305 |
tgggaggaattttcgataggagatgagtttgacttcaagagagag |
349 |
Q |
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|||||||||||||||| ||||| |||||||||||| |||||||| |
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| T |
15251464 |
tgggaggaattttcgacgggagaggagtttgacttcgagagagag |
15251420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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