View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13189_low_6 (Length: 258)
Name: NF13189_low_6
Description: NF13189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13189_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 17175711 - 17175841
Alignment:
| Q |
112 |
caataagaacattgtatctctatttagtacaatacttatttataaaaatagacaactggattagtggtgatgtattagaaaaagatcattataaattcaa |
211 |
Q |
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| T |
17175711 |
caataagaacattatatctctatttagtacaatacttatttataaaaatagacaactggattagtggtgatgtattacaaaaagatcattataaattcaa |
17175810 |
T |
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| Q |
212 |
tgaaatgttaattaaactattatgatagtta |
242 |
Q |
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| T |
17175811 |
tgaaatgttaattaaactattatgatagtta |
17175841 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 17175604 - 17175658
Alignment:
| Q |
9 |
gacatcatcacttttgttctctacaaaaagtaacacatttatcatcagtattttc |
63 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17175604 |
gacatcgtcatttttgttctctacaaaaagtaacacatttatcatcagtattttc |
17175658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 34655971 - 34656094
Alignment:
| Q |
112 |
caataagaacattgtatctctatttagtacaatacttatttataaaaatagacaactggattagtggtgatgtattagaaaaagatcattataaattcaa |
211 |
Q |
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||||||||| ||||||| | |||||| | ||||||||||||| ||||||| ||||| | | ||| | |||||||||| ||||| | | ||||||| ||| |
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| T |
34655971 |
caataagaagattgtatatatatttaatccaatacttatttagaaaaatatacaaccgaactagcgatgatgtattacaaaaataccgttataaacccaa |
34656070 |
T |
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| Q |
212 |
tgaaatgttaattaaactattatg |
235 |
Q |
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| T |
34656071 |
tgaaatgttgattgaaatattatg |
34656094 |
T |
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