View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13189_low_7 (Length: 236)

Name: NF13189_low_7
Description: NF13189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13189_low_7
NF13189_low_7
[»] chr4 (2 HSPs)
chr4 (18-109)||(3428350-3428440)
chr4 (145-216)||(52490107-52490178)
[»] chr1 (1 HSPs)
chr1 (145-216)||(49991103-49991174)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 3428350 - 3428440
Alignment:
Q  18 gtttcatgttgttagagtttatggatagattgattaacgatagagaaaataatgatttttcatgaaattttaggttttccataaagttacaa 109  Q
    |||||||||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428350 gtttcatgttattagagtttatggttagattgattaacaa-agagaaaataatgatttttcatgaaattttaggttttccataaagttacaa 3428440  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 52490107 - 52490178
Alignment:
Q  145 ggtttgtgctccctggcagcagttttggcgctcacgttttgtgtggtgtggccggttttagccggttcctat 216  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||||    
T  52490107 ggtttgtgctccctggcagcagttttggcgcccatgttttgtgtggtgtggccggttttagccagctcctat 52490178  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 49991174 - 49991103
Alignment:
Q  145 ggtttgtgctccctggcagcagttttggcgctcacgttttgtgtggtgtggccggttttagccggttcctat 216  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  49991174 ggtttgtgctccttggcagcagttttggcgcccacgttttgtgtggtgtggccggttttagccagctcctat 49991103  T

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