View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_1 (Length: 889)
Name: NF1318_high_1
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_1 |
 | |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 30 - 749
Target Start/End: Complemental strand, 230824 - 230102
Alignment:
| Q |
30 |
gttaagccaaagtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatgctagctaaaagtttcatacaattaa |
129 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
230824 |
gttaagccaaagtttgcaagggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatgctagctaaaagtttcatacaattaa |
230725 |
T |
|
| Q |
130 |
gccatctattgcttaagtgccaaggaactatgctcttgttagagaaagcattcaccactagtatggaatcagatttcaaccagaaatttaaccaattctt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230724 |
gccatctattgcttaagtgccaaggaactatgctcttgttagagaaagcattcaccactagtatggaatcagatttcaaccagaaatttaaccaattctt |
230625 |
T |
|
| Q |
230 |
atgataagctatctctatggctcttattgcaccaattaattcagcatgaaaggcagaaaccataccaagattttcagatatgcaaagtaaataatcaact |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
230624 |
atgataagctatctctatggctcttattgcaccaattaattcagcatgaaaggcagaaaccataccaagattttcagatatgcaaagtaaataatcagct |
230525 |
T |
|
| Q |
330 |
tcagagtttctaaaaataataccacttgcagaagctaaagcagaagatgaaccatatgtatgtcctttaatccaatgactaataggaggatgccatatga |
429 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
230524 |
ttagagtttctaaaaataataccacttgcagaagctaaagcagaagatgaaccatatgtatttcctttaatccaatgactaataggaggatgccatatga |
230425 |
T |
|
| Q |
430 |
cctctttgatctgaggagccctaggagggtgaatattaattctgaacttcttgatgatagaaaaatctgacattgatgagtttgatgaagctttggagtt |
529 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
230424 |
cctctttgatctgaggagccctaggagagtgaatattaactctgaacttcttgatgatagaaaaatccgacattgatgagtttgatgaagctttggagtt |
230325 |
T |
|
| Q |
530 |
gttaccagataaagctacattagaagagattaaagaaatgacactcttccaatgtattgttttatctttgaatcta---gtattcctggaaaaccaaata |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
230324 |
gttaccagataaagctacattagaagagattaaagaaatggcactcttccaatgtattgttttatctttgaatctagttgtattcctggaaaaccaaata |
230225 |
T |
|
| Q |
627 |
gttgataagacattgatgatggctgctttgatcactatcttgcactgagggttccaccttctatcacagatgtgccaaatttcgtcaatattgttaaagt |
726 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230224 |
gttgataagacattgatgatggctgctttgatcactatcttgcactgagggttccaccttctatcacagatgtgccaaatttcgtcaatattgttaaagt |
230125 |
T |
|
| Q |
727 |
gaaaattgaaatttagagtatta |
749 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
230124 |
gaaaattgaaatttagagtatta |
230102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 30 - 531
Target Start/End: Complemental strand, 12488452 - 12487951
Alignment:
| Q |
30 |
gttaagccaaagtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatgctagctaaaagtttcatacaattaa |
129 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
12488452 |
gttaagccaaagtttgcaagggaatcaacacactgatttccttctctaaaaatatgagatacaacaaaattcatgctagctaagagtttcatacaattaa |
12488353 |
T |
|
| Q |
130 |
gccatctattgcttaagtgccaaggaactatgctcttgttagagaaagcattcaccactagtatggaatcagatttcaaccagaaatttaaccaattctt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
12488352 |
gccatctattgcttaagtgccaaggaactatgctcttgttagagaaagcattcaccactagtatggagtcagattccaaccagaaatttaaccaattctt |
12488253 |
T |
|
| Q |
230 |
atgataagctatctctatggctcttattgcaccaattaattcagcatgaaaggcagaaaccataccaagattttcagatatgcaaagtaaataatcaact |
329 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |
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|
| T |
12488252 |
atgataagctatctctatggctctcattgcaccaattaattcagcatgaaagtcagaaaccataccaagattttcagatatgcaaagtaaacaatcagct |
12488153 |
T |
|
| Q |
330 |
tcagagtttctaaaaataataccacttgcagaagctaaagcagaagatgaaccatatgtatgtcctttaatccaatgactaataggaggatgccatatga |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
12488152 |
tcagagtttctaaaaataataccacttgcagaagctaaagcagaagatgaaccatctgtatttcctttaatccaatgactaataggagggtgccatatga |
12488053 |
T |
|
| Q |
430 |
cctctttgatctgaggagccctaggagggtgaatattaattctgaacttcttgatgatagaaaaatctgacattgatgagtttgatgaagctttggagtt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
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|
| T |
12488052 |
cctctttgatctgaggagccctaggagggtgaatattaactctgaacttcttgatgatagcaaaatccgacattgatgagtttgatgaagctttggaatt |
12487953 |
T |
|
| Q |
530 |
gt |
531 |
Q |
| |
|
|| |
|
|
| T |
12487952 |
gt |
12487951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 51657796 - 51657859
Alignment:
| Q |
41 |
gtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatg |
104 |
Q |
| |
|
|||||||| |||||||||||| || || ||||| ||| |||||||||| || |||||||||||| |
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|
| T |
51657796 |
gtttgcaagggaatcagcacattggttcccttccctataaatatgagaaatcacaaaattcatg |
51657859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 35 - 606
Target Start/End: Complemental strand, 21851660 - 21851089
Alignment:
| Q |
35 |
gccaaagtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaattcatgctagctaaaagtttcatacaattaagccat |
134 |
Q |
| |
|
|||||||||||||| ||||| ||||| || |||||||||||||| || |||||||| ||||||||||||| | |||||| |||||||| || |||| |
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|
| T |
21851660 |
gccaaagtttgcaagagaatctgcacattggtttccttctctaaatatgtgagatattacaaaattcatgccatttaaaagcttcatacagttggaccat |
21851561 |
T |
|
| Q |
135 |
ctattgcttaagtgccaaggaactatgctcttgttagagaaagcattcaccactagtatggaatcagatttcaaccagaaatttaaccaattcttatgat |
234 |
Q |
| |
|
||| | ||||| |||||||| || ||| | | || || || ||||||||||||| ||||| || |||| ||||| ||||| ||||| || | || |
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|
| T |
21851560 |
ctagtacttaattgccaaggcacaatgttactatttgaaaaggcattcaccactaacatggagtctgattctaaccaaaaattcaaccagtttctttgga |
21851461 |
T |
|
| Q |
235 |
aagctatctctatggctcttattgcaccaattaattcagcatgaaaggcagaaaccataccaagattttcagatatgcaaagtaaataatcaacttcaga |
334 |
Q |
| |
|
||||| | |||||||| || |||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||| | |||| | | | | |
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|
| T |
21851460 |
aagctgtttctatggccctcattgcacccaataattcagcatggaaagcagaaaccataccaagattttcagatatgcaaagcaggcaatctgcattaaa |
21851361 |
T |
|
| Q |
335 |
gtttctaaaaataataccacttgcagaagctaaagcagaagatgaaccatatgtatgtcctttaatccaatgactaataggaggatgccatatgacctct |
434 |
Q |
| |
|
|| |||||| ||||| ||||| ||||||||| || || || || |||| ||| | |||||| ||||| | ||||| ||||| ||||| | ||||| |
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|
| T |
21851360 |
gtctctaaatataatgccactagcagaagctgaatttgatgaagagccatctgtgtttcctttgatccagtatctaatgggaggctgccacaaaacctcc |
21851261 |
T |
|
| Q |
435 |
ttgatctgaggagccctaggagggtgaatattaattctgaacttcttgatgatagaaaaatctgacattgatgagtttgatgaagctttggagttgttac |
534 |
Q |
| |
|
||||||||||| || || ||||| ||||| || | ||| ||||||||||||||| |||||| | ||| || || || || ||||||| |||||||||| |
|
|
| T |
21851260 |
ttgatctgaggggctcttggaggatgaatgttcactctaaacttcttgatgataacaaaatcagtcatagaagaattagaaaaagctttagagttgttac |
21851161 |
T |
|
| Q |
535 |
cagataaagctacattagaagagattaaagaaatgacactcttccaatgtattgttttatctttgaatctag |
606 |
Q |
| |
|
|||| |||| ||||| || || |||||||| || || |||||| || ||| |||||| |||||||||| |
|
|
| T |
21851160 |
cagacaaagtcacatttgaggaaattaaagagattgcagacttccagtgaatttgtttatccttgaatctag |
21851089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 11072746 - 11072813
Alignment:
| Q |
33 |
aagccaaagtttgcaacggaatcagcacactgatttccttctctaaaaatatgagatataacaaaatt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| ||||||| | |||||| | | ||||||||| |
|
|
| T |
11072746 |
aagccaaagtttgcaaaggaatcagcacactggtttatttctctagatatatgacaaacaacaaaatt |
11072813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 40543939 - 40543990
Alignment:
| Q |
53 |
atcagcacactgatttccttctctaaaaatatgagatataacaaaattcatg |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| || ||| |||||| |
|
|
| T |
40543939 |
atcagcacactgatttccttccctaaaaatgtgagatacaataaagttcatg |
40543990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 663 - 721
Target Start/End: Complemental strand, 70716 - 70658
Alignment:
| Q |
663 |
atcttgcactgagggttccaccttctatcacagatgtgccaaatttcgtcaatattgtt |
721 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||||||||||| || || |||||||| |
|
|
| T |
70716 |
atcttgcactgaggactccaccatctatcacggatgtgccaaatatcttctatattgtt |
70658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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