View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_111 (Length: 263)
Name: NF1318_high_111
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_111 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 47424518 - 47424719
Alignment:
| Q |
42 |
ttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcagcgaccttacgaaaaatcatctacaacactgcagaaaccatctaatc |
141 |
Q |
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| T |
47424518 |
ttctctagaagaaaaaaggattattcttagcataaccttgaaatcaattttcaacgaccttacgaaaaatcatctacaacactgcagaaaccatctaatc |
47424617 |
T |
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| Q |
142 |
tacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttgggtacttcatc |
241 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
47424618 |
tacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaattgatgtttggacacttcatc |
47424717 |
T |
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| Q |
242 |
tc |
243 |
Q |
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|| |
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| T |
47424718 |
tc |
47424719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 47391042 - 47391161
Alignment:
| Q |
133 |
catctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttggg |
232 |
Q |
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|||||| ||| | ||||||||||||||||| ||||||||| |||||||||| | ||||||||| |||||||||||| ||||||| || | ||| || |
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| T |
47391042 |
catctattctgcctacctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttagg |
47391141 |
T |
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| Q |
233 |
tacttcatctcactcgacaa |
252 |
Q |
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|| |||||||| || ||||| |
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| T |
47391142 |
tatttcatctctctagacaa |
47391161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 47419405 - 47419515
Alignment:
| Q |
133 |
catctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtttggg |
232 |
Q |
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|||||| ||||| ||||||||||||||||| || |||||| |||||||||| | ||||||||| |||||||||||| ||||||| || | |||||| |
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| T |
47419405 |
catctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttggg |
47419504 |
T |
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| Q |
233 |
tacttcatctc |
243 |
Q |
| |
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| |||||||| |
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| T |
47419505 |
catttcatctc |
47419515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 243
Target Start/End: Original strand, 47421873 - 47421987
Alignment:
| Q |
129 |
aaaccatctaatctacgtacctgttgttgcacttctgttaatgccgatataagcatctgcttccccacaatgcctttcataagcagtacaaattgatgtt |
228 |
Q |
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|||| ||||| ||||| ||||||||||||||||| || |||||| |||||||| | | ||||||||| |||||||||||| ||||||| || | || |
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| T |
47421873 |
aaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttctt |
47421972 |
T |
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| Q |
229 |
tgggtacttcatctc |
243 |
Q |
| |
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| |||| |||||||| |
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| T |
47421973 |
tcggtatttcatctc |
47421987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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