View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_high_120 (Length: 252)

Name: NF1318_high_120
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_high_120
NF1318_high_120
[»] chr3 (8 HSPs)
chr3 (1-245)||(38088631-38088868)
chr3 (141-245)||(25224695-25224799)
chr3 (136-245)||(48204347-48204456)
chr3 (141-234)||(48211001-48211094)
chr3 (136-184)||(20861305-20861353)
chr3 (137-184)||(38331185-38331232)
chr3 (149-245)||(42514600-42514698)
chr3 (156-245)||(30996021-30996110)
[»] chr7 (15 HSPs)
chr7 (141-245)||(8839322-8839426)
chr7 (137-245)||(29059801-29059909)
chr7 (141-245)||(13254142-13254246)
chr7 (137-245)||(19477286-19477394)
chr7 (137-245)||(28537386-28537494)
chr7 (141-245)||(31492099-31492203)
chr7 (156-245)||(21747096-21747184)
chr7 (136-241)||(21411660-21411765)
chr7 (140-245)||(40099312-40099417)
chr7 (137-234)||(46373680-46373777)
chr7 (146-231)||(7190405-7190490)
chr7 (149-233)||(35707855-35707938)
chr7 (165-232)||(28828830-28828897)
chr7 (147-245)||(20207494-20207591)
chr7 (156-241)||(24579508-24579593)
[»] chr4 (10 HSPs)
chr4 (137-245)||(14854601-14854709)
chr4 (137-245)||(31307103-31307211)
chr4 (137-245)||(35972339-35972447)
chr4 (137-245)||(38766085-38766193)
chr4 (156-232)||(35334154-35334230)
chr4 (160-245)||(38844228-38844313)
chr4 (141-229)||(7096108-7096196)
chr4 (137-233)||(45994530-45994626)
chr4 (137-245)||(13686597-13686706)
chr4 (156-205)||(13948648-13948697)
[»] chr1 (13 HSPs)
chr1 (137-233)||(22022128-22022224)
chr1 (156-245)||(16756078-16756167)
chr1 (156-229)||(31733747-31733820)
chr1 (156-233)||(36982363-36982440)
chr1 (136-227)||(46864105-46864196)
chr1 (156-229)||(32883626-32883699)
chr1 (149-245)||(10841013-10841109)
chr1 (156-232)||(40019250-40019326)
chr1 (165-245)||(17600563-17600643)
chr1 (165-245)||(29124741-29124821)
chr1 (146-234)||(32534090-32534178)
chr1 (141-234)||(45806243-45806336)
chr1 (156-204)||(9781045-9781093)
[»] scaffold0182 (1 HSPs)
scaffold0182 (137-234)||(26338-26435)
[»] chr2 (12 HSPs)
chr2 (137-245)||(993750-993857)
chr2 (136-245)||(42745152-42745261)
chr2 (120-245)||(44732597-44732718)
chr2 (158-245)||(37568785-37568872)
chr2 (138-232)||(7157507-7157601)
chr2 (137-234)||(7020397-7020492)
chr2 (137-245)||(5394393-5394500)
chr2 (140-231)||(9438176-9438267)
chr2 (156-245)||(31579285-31579374)
chr2 (137-245)||(12133267-12133375)
chr2 (140-200)||(39314487-39314547)
chr2 (140-245)||(18105402-18105507)
[»] chr8 (11 HSPs)
chr8 (137-232)||(19715763-19715858)
chr8 (156-245)||(2743929-2744018)
chr8 (137-245)||(30936000-30936108)
chr8 (137-232)||(12958122-12958217)
chr8 (137-245)||(4125061-4125169)
chr8 (136-232)||(30056037-30056133)
chr8 (156-243)||(13468801-13468888)
chr8 (141-232)||(15682938-15683029)
chr8 (166-234)||(27121816-27121884)
chr8 (137-232)||(36994537-36994632)
chr8 (165-245)||(35206996-35207076)
[»] chr5 (6 HSPs)
chr5 (139-245)||(31113330-31113436)
chr5 (147-227)||(18909348-18909428)
chr5 (139-229)||(2804521-2804611)
chr5 (156-245)||(10591923-10592012)
chr5 (139-229)||(2798354-2798444)
chr5 (155-245)||(30785041-30785131)
[»] chr6 (7 HSPs)
chr6 (137-205)||(12836934-12837002)
chr6 (156-245)||(31107549-31107638)
chr6 (165-231)||(423665-423731)
chr6 (136-202)||(31412161-31412227)
chr6 (160-233)||(12411156-12411229)
chr6 (155-227)||(29185307-29185379)
chr6 (156-224)||(31489532-31489600)
[»] scaffold0009 (1 HSPs)
scaffold0009 (166-243)||(32330-32407)
[»] scaffold0020 (1 HSPs)
scaffold0020 (174-245)||(167851-167920)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 38088868 - 38088631
Alignment:
Q  1 tgtctattactgcttaaaacttaaaagaatacgaaccgtggattgaatttatgagcatggttatatactaaatgcaattgatcatgcatgtaacnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  38088868 tgtctattactgcttaaaacttaaaagaatacgaaccgtggattgaatttatgagcatggttatatactaaatgcaattgatcatgcatgtaac------ 38088775  T
Q  101 nnnnnnnnnnnnnaaatcaggtatcctctgcgcgcaacccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattc 200  Q
                 ||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| || ||||||| ||||    
T  38088774 ttcttttttttttaaaccaggtat-ctccgcgcgcaacccaaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattc 38088676  T
Q  201 gaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||    
T  38088675 gaacctggaaccttggttaagctagaagagacccgtttcatctca 38088631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 25224799 - 25224695
Alignment:
Q  141 aaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttca 240  Q
    |||| ||||||||||||||| || |||||||||||||||||||| || ||| ||  |||||||||    ||||||||||||||||||||||||| |||||    
T  25224799 aaatgggcggcaagttctccttaagagttttaacgctgctgcattcccaaaacttgattcgaacccaggaccttggttaagctagaagagacccgtttca 25224700  T
Q  241 tctca 245  Q
    |||||    
T  25224699 tctca 25224695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 48204347 - 48204456
Alignment:
Q  136 aacccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccca 235  Q
    ||||||||| | || |||| |||||||| | ||||||||| |||||||| || || |||| |||||||||  | ||||||||||||||||||||||| |     
T  48204347 aacccaaatggacgacaagctctccctaagggttttaacgttgctgcatgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcg 48204446  T
Q  236 tttcatctca 245  Q
    || |||||||    
T  48204447 ttccatctca 48204456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 48211001 - 48211094
Alignment:
Q  141 aaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccc 234  Q
    |||||| ||||||| ||||| || ||||||||||| |||||||| |  || |||| |||||||||  |||||||| ||||| ||||||||||||    
T  48211001 aaatagacggcaagctctccataagagttttaacgttgctgcatgctcaaggctggattcgaaccaaaaaccttgattaagttagaagagaccc 48211094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 20861353 - 20861305
Alignment:
Q  136 aacccaaataggcggcaagttctccctacgagttttaacgctgctgcat 184  Q
    ||||||||| ||||||| | |||||||| ||||||||||||||||||||    
T  20861353 aacccaaatgggcggcaggctctccctaagagttttaacgctgctgcat 20861305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 38331232 - 38331185
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcat 184  Q
    |||||||| ||||||||| |||| ||| ||||||||||||||||||||    
T  38331232 acccaaatgggcggcaagctctctctaagagttttaacgctgctgcat 38331185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 42514698 - 42514600
Alignment:
Q  149 ggcaagttctccctacgagttttaacgc--tgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||| |||||||| ||||||||||||  || ||||| || |||| || |||||||||  | || || ||||||||||||||||| | ||||||||||    
T  42514698 ggcaagctctccctaagagttttaacgcgctgatgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctca 42514600  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 30996021 - 30996110
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||||| |||||||||||||| ||||| || || |  | |||||||||    |||||||||||| |||||||||||| || |||||||    
T  30996021 tctccctaagagttttaacgctgttgcatgcccaaggtcggattcgaacccaggaccttggttaagatagaagagacccgttccatctca 30996110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 8839322 - 8839426
Alignment:
Q  141 aaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttca 240  Q
    ||||||||||||  ||||||||| |||||||||||||||||||| || || |||| |||||||||    ||||||||||||||||||||||||| |||||    
T  8839322 aaataggcggcagattctccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttca 8839421  T
Q  241 tctca 245  Q
    |||||    
T  8839422 tctca 8839426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 29059909 - 29059801
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| ||||||| | |||||||| |||||||||| ||||||||| || || |||| |||||||||    ||||||||||||||||||||||||| |    
T  29059909 acccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgt 29059810  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  29059809 tccatctca 29059801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 13254142 - 13254246
Alignment:
Q  141 aaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttca 240  Q
    |||| ||||||| | |||||||| |||||| ||||||||||||| ||||| |||| ||||||||     ||||||||||||||||||||||||| || ||    
T  13254142 aaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaagctagaagagacccgttcca 13254241  T
Q  241 tctca 245  Q
    |||||    
T  13254242 tctca 13254246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 19477286 - 19477394
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| | ||||||| |||||||| |||||||||| ||| ||||| || || |||| |||| ||||   |||||||||||||||||||||||||| |    
T  19477286 acccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctagaagagacccgt 19477385  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  19477386 tccatctca 19477394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 28537494 - 28537386
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| ||||||| | |||||||| ||||||||||| || ||||| || || |||| |||||||||  |||||||| ||||| |||||||||||| |    
T  28537494 acccaaatgggcggcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgt 28537395  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  28537394 tccatctca 28537386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 31492203 - 31492099
Alignment:
Q  141 aaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttca 240  Q
    |||| ||||||| | |||||||| |||||||||| ||||||||| || || |||| |||||||||    ||||||||||||||||||||||||| || ||    
T  31492203 aaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttcca 31492104  T
Q  241 tctca 245  Q
    |||||    
T  31492103 tctca 31492099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 21747096 - 21747184
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||||| ||||||||||||||| |||| |||||||||| |||||| || |  |||||||||||| |||||||||||| || |||||||    
T  21747096 tctccctaagagttttaacgctgcagcatgcctaaagctggattcgacccag-gaccttggttaagttagaagagacccgttccatctca 21747184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 21411660 - 21411765
Alignment:
Q  136 aacccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccca 235  Q
    |||| ||||||||| ||||||||  ||| ||||||||||||| |||||| |  ||| ||||||||||||   ||||||| |||||| |||||||||| ||    
T  21411660 aacctaaataggcgacaagttctttctaagagttttaacgctactgcatgctcaaatctgaattcgaactcaaaaccttcgttaagttagaagagactca 21411759  T
Q  236 tttcat 241  Q
    | ||||    
T  21411760 tgtcat 21411765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 40099312 - 40099417
Alignment:
Q  140 caaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttc 239  Q
    ||||| ||||||||| |||||||| ||||||||| ||||||||||| | ||||||| |||||||      | ||| ||||||||||||||||||| || |    
T  40099312 caaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaagagacccgttcc 40099411  T
Q  240 atctca 245  Q
    ||||||    
T  40099412 atctca 40099417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 46373777 - 46373680
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccc 234  Q
    |||||||||||||||||| |||||||||||||||||||| || || || || ||  ||| |||||||||    | |||| ||||||||||||||||||    
T  46373777 acccaaataggcggcaagctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggatcttgcttaagctagaagagaccc 46373680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 7190405 - 7190490
Alignment:
Q  146 ggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagaga 231  Q
    ||||| ||||||||||||  ||||||||| | ||||||| || || ||||||||| |||    |||||||||||||||||||||||    
T  7190405 ggcggtaagttctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagaga 7190490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 35707938 - 35707855
Alignment:
Q  149 ggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacc 233  Q
    ||||||||||||||| || |||||||| || |||||  | |||| || ||||||||| ||| |||||||||| ||||||||||||    
T  35707938 ggcaagttctccctaagaattttaacgttgttgcatgtccaaagttggattcgaaccagaa-ccttggttaaactagaagagacc 35707855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 28828830 - 28828897
Alignment:
Q  165 gagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    |||||||||||||||| |||   ||||| ||||||||||||| |||  || |||||||||||||||||    
T  28828830 gagttttaacgctgctacatgtttaaagttgaattcgaacctaaaatattagttaagctagaagagac 28828897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 20207591 - 20207494
Alignment:
Q  147 gcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||||| ||||| || ||||||||||| || | ||| ||||| |||||||| |||||  ||| ||| |||||||||||||| | |||| ||||||||    
T  20207591 gcggcaagctctccttaagagttttaacgttgttacatgcctaaggctgaattagaacc-caaatcttagttaagctagaagaaatccatatcatctca 20207494  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 24579508 - 24579593
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcat 241  Q
    |||||||| | |||||| |  |||||||| | |||||||||||||||||    |||||||||||| ||||||||||| ||| ||||    
T  24579508 tctccctaagtgttttatcaatgctgcatgcgtaaagctgaattcgaactcagaaccttggttaaactagaagagactcatgtcat 24579593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 14854709 - 14854601
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| ||||||||| |||||||| ||||||||||| |||||||| || || |||| |||||||||   ||||||||||||||||||||||| || |    
T  14854709 acccaaatgggcggcaagctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgt 14854610  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  14854609 tccatctca 14854601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 31307103 - 31307211
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| ||||||| | |||||||| |||||||||| ||||||||| || || |||| |||||||||    ||||||||||||||||||||||||| |    
T  31307103 acccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgt 31307202  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  31307203 tccatctca 31307211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 35972447 - 35972339
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| ||||||||  ||||||||  |||||||||||||||| || || |  |||| |||||||||  | ||||||||||||||||||||| ||| |    
T  35972447 acccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcccatggctggattcgaacccaagaccttggttaagctagaagaggcccgt 35972348  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  35972347 tccatctca 35972339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 38766193 - 38766085
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| |||||||   |||||||| |||||||||||||||||||| || || |||| |||| ||||    ||||||||||||||||||||||| | |    
T  38766193 acccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctggattcaaacccaggaccttggttaagctagaagagactcgt 38766094  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  38766093 tccatctca 38766085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 35334154 - 35334230
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    |||| ||| |||||||||| ||||||||| || || ||||||| ||||||   ||||||||||||||||||||||||    
T  35334154 tctctctaagagttttaactctgctgcatgcccaaggctgaatacgaaccaagaaccttggttaagctagaagagac 35334230  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 38844228 - 38844313
Alignment:
Q  160 cctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||| |||||||||||||| ||||| || ||||||| ||||||||     ||||||||||||||||||||||| | || |||||||    
T  38844228 cctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttccatctca 38844313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 7096196 - 7096108
Alignment:
Q  141 aaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaaga 229  Q
    |||| ||||| ||| |||||||| ||||||||||  ||||||||||  ||  ||| |||| ||||  ||||||||||||||||||||||    
T  7096196 aaatgggcggtaagctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttggttaagctagaaga 7096108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 45994626 - 45994530
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacc 233  Q
    |||||||| |||| || | |||||||| ||||||||||| || ||||| || || |||| ||||||| |    ||||||||||||||||||||||||    
T  45994626 acccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaatccaggaccttggttaagctagaagagacc 45994530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 13686706 - 13686597
Alignment:
Q  137 acccaaataggcggcaagttctccct-acgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccca 235  Q
    |||||||| | ||||||  ||||||| | |||||||||||||||||||  || || | || |||||||||    ||||||||||||| ||||||||||||    
T  13686706 acccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacccaggaccttggttaagcaagaagagaccca 13686607  T
Q  236 tttcatctca 245  Q
    |  |||||||    
T  13686606 tgccatctca 13686597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 13948648 - 13948697
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacc 205  Q
    |||||||| |||||||||| |||||||||||| || |||| |||||||||    
T  13948648 tctccctaagagttttaacactgctgcatacccaaggctggattcgaacc 13948697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 22022224 - 22022128
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacc 233  Q
    |||||||| || ||||||||||||||| ||||||||| |||||||||| || || |||| |||||||||   |||||| ||||||||||||||||||    
T  22022224 acccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgcccaaggctggattcgaacccacaaccttagttaagctagaagagacc 22022128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 16756167 - 16756078
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||||| ||||||||||||| |||||| || || ||||||||| ||||   ||||||||||||||||||||||| || || |||||||    
T  16756167 tctccctaagagttttaacgcttctgcatgcccaatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctca 16756078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 31733747 - 31733820
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaaga 229  Q
    |||||||| |||||||||| ||||||||| ||||| ||||||||||||||  |||| ||||||||| |||||||    
T  31733747 tctccctaagagttttaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 31733820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 36982440 - 36982363
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacc 233  Q
    |||||||| ||||||||||| || |||||  |||| |||||||||||||| || ||||||||||| ||||||||||||    
T  36982440 tctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacc 36982363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 46864196 - 46864105
Alignment:
Q  136 aacccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaa 227  Q
    ||||||||| | |||||||||||||||| || |||||||||| |||||| || ||||||| ||| |||||  |||| ||| |||||||||||    
T  46864196 aacccaaatggacggcaagttctccctaagaattttaacgctactgcatgcccaaagctggatttgaacccaaaactttgattaagctagaa 46864105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 32883626 - 32883699
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaaga 229  Q
    |||||||| ||||||||||||||||||||  | || |||| |||||||||  ||| ||||||||||||||||||    
T  32883626 tctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 245
Target Start/End: Complemental strand, 10841109 - 10841013
Alignment:
Q  149 ggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    ||||||||||||||| || |||||||| || | ||| || || |||||||| |||||  ||| |||||||||| |||||||||||  ||||||||||    
T  10841109 ggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaatttgaacccaaaatcttggttaagatagaagagacctgtttcatctca 10841013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 40019326 - 40019250
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    |||||| | ||||||||||| ||||||||| | || ||||||||||||||  |||||||| ||||| ||||||||||    
T  40019326 tctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagac 40019250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 17600563 - 17600643
Alignment:
Q  165 gagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    ||||||||||| || ||||| |  || ||||||||| ||||  | ||||||||||||||||||||||||| | ||||||||    
T  17600563 gagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctca 17600643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 29124821 - 29124741
Alignment:
Q  165 gagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||||||||||||||||| || || |||| ||||||||     ||| ||||||||||||||||||| | ||||||||||    
T  29124821 gagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctca 29124741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 32534178 - 32534090
Alignment:
Q  146 ggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccc 234  Q
    ||||| ||| |||| ||| ||||||||||| || ||||| |  ||||||||||| ||| |  |||||||||||||||||||||| ||||    
T  32534178 ggcggtaagctctctctaagagttttaacgttgttgcatgctcaaagctgaatttgaatccaaaaccttggttaagctagaagaaaccc 32534090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 45806336 - 45806243
Alignment:
Q  141 aaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccc 234  Q
    |||||||||| | | |||||||| |||||||||  ||||||||| || ||  ||||||||||||     |||||||||||| ||||||||||||    
T  45806336 aaataggcggtatgctctccctaagagttttaaaactgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaagagaccc 45806243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 9781045 - 9781093
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaac 204  Q
    |||||||| |||||||||||||||||||| || || |||| ||||||||    
T  9781045 tctccctaagagttttaacgctgctgcatgcccaaggctggattcgaac 9781093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 26435 - 26338
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccc 234  Q
    |||||||| ||||||| | |||||||| |||||||||| ||||||||| || || |||| |||||||||    |||||||||||||||||||||||||    
T  26435 acccaaatgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagaccc 26338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 993857 - 993750
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||| || || | ||||||||||||    ||||||||||||||| ||||||| | |    
T  993857 acccaaatgggcggcaagttctccctaagagtttt-acgctgctgcatgcccaaggttgaattcgaacccaggaccttggttaagctataagagacacgt 993759  T
Q  237 ttcatctca 245  Q
     ||||||||    
T  993758 gtcatctca 993750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 42745152 - 42745261
Alignment:
Q  136 aacccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccca 235  Q
    ||||||||||||| |||   |||||||| ||||||||||  |||||||| || || |||| |||||||||  | ||||||||||||||| |||||||||     
T  42745152 aacccaaataggcagcagactctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaagaccttggttaagctataagagacccg 42745251  T
Q  236 tttcatctca 245  Q
    || |||||||    
T  42745252 ttccatctca 42745261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 44732597 - 44732718
Alignment:
Q  120 ggtatcctctgcgcgcaacccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggtta 219  Q
    ||||||||| |||||||||    || ||||||| | |||||||| |||||||||| ||||||||| || || |||| |||||||||    ||||||||||    
T  44732597 ggtatcctccgcgcgcaac----atgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggtta 44732692  T
Q  220 agctagaagagacccatttcatctca 245  Q
    ||||| ||||||||| || |||||||    
T  44732693 agctataagagacccgttccatctca 44732718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 37568785 - 37568872
Alignment:
Q  158 tccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||| |||||||||| ||||||||| ||||| |||| |||||||||    |||||||||||||||||||| |||| || |||||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctca 37568872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 7157601 - 7157507
Alignment:
Q  138 cccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    ||||||||||||||| | |||||||| ||||||||||| |||||||| || || |||  ||||||||||   | |||||||||| ||||||||||    
T  7157601 cccaaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagac 7157507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 7020397 - 7020492
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccc 234  Q
    |||||||| |||||||||||||||||| || |||||||  |||||||| ||||||  ||||||||||    | |||||||||||||||||||||||||    
T  7020397 acccaaatgggcggcaagttctccctaaga-ttttaacattgctgcatgcctaaat-tgaattcgaattcaagaccttggttaagctagaagagaccc 7020492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 5394500 - 5394393
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| ||||||| | |||||||| ||||||||||  |||||||| || || |||| |||||||||    ||||||||||||||||||||||| | |    
T  5394500 acccaaatgggcggcaggctctccctaagagttttaaca-tgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgt 5394402  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  5394401 tccatctca 5394393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 9438176 - 9438267
Alignment:
Q  140 caaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagaga 231  Q
    ||||| ||||||| ||||| |||| |||||||||| ||||||||| || || |||| |||||||||  | || |||||||||||| ||||||    
T  9438176 caaatgggcggcaggttcttcctaagagttttaaccctgctgcatgcccaaggctggattcgaaccaaagactttggttaagctaaaagaga 9438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 31579285 - 31579374
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    ||||||||  ||||||||| ||| ||||| || || |||| |||||||||  | |||||| |||||||||||||||||| || |||||||    
T  31579285 tctccctaaaagttttaacactgttgcatgcccaaggctggattcgaacccaagaccttgattaagctagaagagacccgttacatctca 31579374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 12133267 - 12133375
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| | ||||| | |||||||| ||||||||||| ||||||||  | || |||| |||||||||    |||||| |||||||||||||||| | |    
T  12133267 acccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagactcgt 12133366  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  12133367 tccatctca 12133375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 39314547 - 39314487
Alignment:
Q  140 caaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattc 200  Q
    ||||| ||||||||  ||||||||||||||||||||| ||||||| || ||| ||||||||    
T  39314547 caaatgggcggcaaactctccctacgagttttaacgcagctgcatgcccaaaactgaattc 39314487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 18105402 - 18105507
Alignment:
Q  140 caaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttc 239  Q
    ||||| ||||||| | ||||| || || |||||||| || ||||| || || |||| |||||||||    ||||||||||||||||||||||| | || |    
T  18105402 caaatgggcggcaggctctccataagaattttaacgttgttgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttcc 18105501  T
Q  240 atctca 245  Q
    ||||||    
T  18105502 atctca 18105507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 19715763 - 19715858
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    |||||||| ||||||||| |||||||  |||||||||||||||||||| || || |||| |||||||||    |||||||||||||||||| ||||    
T  19715763 acccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaaaagac 19715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 2744018 - 2743929
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||||| |||||||||| ||||||||| || || |||| |||||||||    ||||||||||||||||||||||||| || |||||||    
T  2744018 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctca 2743929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 30936108 - 30936000
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| ||||||| | |||||||| ||||||||||| |||||||| | ||| |||| ||||||||     |||||||||||| |||||||||||| |    
T  30936108 acccaaatgggcggcaggctctccctaagagttttaacgttgctgcatgcttaaggctggattcgaactcaggaccttggttaagttagaagagacccgt 30936009  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  30936008 tccatctca 30936000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 12958122 - 12958217
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    |||||||| |||| || | |||||||| |||||||||||||||||||| || || |||| |||| ||||    |||||||||||||||||||||||    
T  12958122 acccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaacccatgaccttggttaagctagaagagac 12958217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 4125061 - 4125169
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccat 236  Q
    |||||||| ||||||| | |||||||| ||||||||||  |||||||| || || |||  |||||||||    || |||||||||||||||||||||| |    
T  4125061 acccaaatgggcggcaggctctccctaagagttttaacagtgctgcatgcccaaggcttgattcgaacccaggacattggttaagctagaagagacccgt 4125160  T
Q  237 ttcatctca 245  Q
    | |||||||    
T  4125161 tccatctca 4125169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 232
Target Start/End: Original strand, 30056037 - 30056133
Alignment:
Q  136 aacccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    ||||||||| | ||||| | |||||||| ||||||||| |||||||||| ||||| |||| ||| |||||    ||||| |||||||||||||||||    
T  30056037 aacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatgaccttcgttaagctagaagagac 30056133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 13468801 - 13468888
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatct 243  Q
    |||| ||| |||||||||||||||| ||| || || |||| |||||||||    ||||||||||||||||||||||||| || |||||    
T  13468801 tctctctaagagttttaacgctgctacatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatct 13468888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 15683029 - 15682938
Alignment:
Q  141 aaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    |||| ||||||| | |||||||| |||||||||||||||||||| || || |||| ||||||||     |||||| ||||||||||||||||    
T  15683029 aaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttgattaagctagaagagac 15682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 27121816 - 27121884
Alignment:
Q  166 agttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagaccc 234  Q
    ||||||||| ||| ||||| | |||||||| |||||||||   ||| ||||||||||||||||||||||    
T  27121816 agttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagaccc 27121884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 36994537 - 36994632
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagac 232  Q
    |||||||| ||| ||||  ||||| || ||||||||||||||||||||  | || |||| |||||||||    ||||||||||| |||||||||||    
T  36994537 acccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttggttaaactagaagagac 36994632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 35207076 - 35206996
Alignment:
Q  165 gagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    ||||||||||||||||||||  | || | | ||||||||||   || |||||||||| |||||||||||  ||||||||||    
T  35207076 gagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctca 35206996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 31113436 - 31113330
Alignment:
Q  139 ccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccattt 238  Q
    |||||| ||||| | | |||||||| |||||||||| ||||||||| || || |||||||||||||||  ||||||  |||||||| || |||||| |||    
T  31113436 ccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctaaaaaagacccgttt 31113337  T
Q  239 catctca 245  Q
    |||||||    
T  31113336 catctca 31113330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 18909348 - 18909428
Alignment:
Q  147 gcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaa 227  Q
    ||||||| ||||||||| |||||||||| |||||||||||| || |||| ||||||||||   |||||| |||||||||||    
T  18909348 gcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggaccttgattaagctagaa 18909428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 2804521 - 2804611
Alignment:
Q  139 ccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaaga 229  Q
    |||||| ||||| ||| ||||||||  ||||||||||||||||||| |  || | || |||||||||  ||||||||||||||||||||||    
T  2804521 ccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctagaaga 2804611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 10592012 - 10591923
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||||| |||||||||| ||||||||| || || |||| |||||||||    ||||||||||| ||||||||||||| || |||||||    
T  10592012 tctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaatctagaagagacccgttccatctca 10591923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 2798354 - 2798444
Alignment:
Q  139 ccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaaga 229  Q
    |||||| ||||| ||| ||||||||  ||||||||||||||||||| |  || | || |||||||||   |||||||||||||||||||||    
T  2798354 ccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctagaaga 2798444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 30785041 - 30785131
Alignment:
Q  155 ttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    ||||||||| ||||||||||| ||||||||  | ||||||| |||||||||  | || ||| |||||||||||||||| | || |||||||    
T  30785041 ttctccctaagagttttaacgttgctgcatgtccaaagctggattcgaacccaagacattgattaagctagaagagactcgttccatctca 30785131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 12836934 - 12837002
Alignment:
Q  137 acccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacc 205  Q
    |||||||| |||||| || |||||||| |||||||||||||||||||| ||||| |||| |||||||||    
T  12836934 acccaaatgggcggcgagctctccctaagagttttaacgctgctgcatgcctaaggctggattcgaacc 12837002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 31107549 - 31107638
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    |||||| | |||||||||||||| |||||  | || |||| ||||||||    |||||| |||||| |||||||||||||||||||||||    
T  31107549 tctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagacccatttcatctca 31107638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 423731 - 423665
Alignment:
Q  165 gagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagaga 231  Q
    ||||||||||||||| |||| || || |||| |||| ||||  ||||||||||||| ||||||||||    
T  423731 gagttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttggttaaactagaagaga 423665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 31412227 - 31412161
Alignment:
Q  136 aacccaaataggcggcaagttctccctacgagttttaacgctgctgcatacctaaagctgaattcga 202  Q
    ||||||||| |||||||   |||||||| |||||||||| ||||||||  || ||||||||||||||    
T  31412227 aacccaaatgggcggcagactctccctaagagttttaacactgctgcacgcccaaagctgaattcga 31412161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 12411229 - 12411156
Alignment:
Q  160 cctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacc 233  Q
    |||| |||||||||||||||||||| || || |||| ||||||||     |||||||||||| |||||||||||    
T  12411229 cctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttggttaagttagaagagacc 12411156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 29185379 - 29185307
Alignment:
Q  155 ttctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaa 227  Q
    ||||||||| ||||||||||| || |||||  |||| |||| ||||||||||  |||||| ||||| ||||||    
T  29185379 ttctccctaagagttttaacgttgatgcatgtctaatgctggattcgaacctagaaccttagttaaactagaa 29185307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 31489600 - 31489532
Alignment:
Q  156 tctccctacgagttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagcta 224  Q
    ||||||||  |||||||||| ||||||||||| ||||||| |||| ||||   ||||||| ||||||||    
T  31489600 tctccctaaaagttttaacgttgctgcatacccaaagctgtattcaaacccagaaccttgattaagcta 31489532  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 32330 - 32407
Alignment:
Q  166 agttttaacgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatct 243  Q
    |||||||||||||||||||||| ||   || |||||||||   ||||||||| |||||||||||||||| || |||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacccgttccatct 32407  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 167920 - 167851
Alignment:
Q  174 cgctgctgcatacctaaagctgaattcgaacctgaaaccttggttaagctagaagagacccatttcatctca 245  Q
    ||||||||||| || || |||| ||| ||||| ||  ||||| |||||||||||||||||| ||||||||||    
T  167920 cgctgctgcatgcccaaggctggatttgaacccga--ccttgattaagctagaagagacccgtttcatctca 167851  T

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