View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_high_123 (Length: 251)
Name: NF1318_high_123
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_123 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6985539 - 6985298
Alignment:
| Q |
1 |
taacaaacatactccaaaatgaaataaattactgtactattatgaaagaaattattataatcttacttcaaaaactgcaaagattaacatatctttatta |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6985539 |
taacaaacatactccaaaaagaaataaattactgtactattatttaagaaattattataatcttacttcaaaaactgtaaagattaacatatctttatta |
6985440 |
T |
|
| Q |
101 |
t---acttaacaaaatcacctatgtcgcaaggtaaaatgtgtaatgtctcacaagtttttgtcaatccagcaaatatggcatagaaagacatttaataga |
197 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6985439 |
ttatacttaacaaaatcacctatgtcgcaaggtaaaatgtgtaatgtctcacaagtttttgtcaatccagcaaatatggcatagaaagacatttaataga |
6985340 |
T |
|
| Q |
198 |
aactattttttattcctctttttacatagagatttcttcctt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6985339 |
aactattttttattcctctttttacatagagatttcttcctt |
6985298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University