View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_16 (Length: 568)
Name: NF1318_high_16
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 16 - 539
Target Start/End: Complemental strand, 38955121 - 38954592
Alignment:
| Q |
16 |
atcacatttaatcaaaacatcaattgcacttttcattatgtacctgttatataaatcaactaacaaaaatgttagacgatgnnnnnnnggattctttgca |
115 |
Q |
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| T |
38955121 |
atcacatttaatcaaaacatcaattgcacttttcattatgcacctgttatataaatcaactaacaaaa-tgttagacgatgaaaaaaaggattctttgca |
38955023 |
T |
|
| Q |
116 |
tggcctgtggcctaaattttccaccagaaccatattgaattgaaggcatacctaaagtgtaaatatagaaatcctggaatctgtcaagaacttgacatcc |
215 |
Q |
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| T |
38955022 |
tggcctgtggcctaaattttccacccgaaccatattgaattgaaggcatacctaaagtgtaaatatagaaatcctggaatctgtcaagaacttgacatcc |
38954923 |
T |
|
| Q |
216 |
aacacggatttgacagtgattttacctgtacgcagatgatacaaccacaagcttcaaatccaccttccataattctaagcaacttattatacttagaatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954922 |
aacacggatttgacagtgattttacctgtacgcagatgatacaaccacaagcttcaaatccaccttccataattctaagcaacttattatacttagaatc |
38954823 |
T |
|
| Q |
316 |
taaggccaccacgtgaaaatttacacct-------gccaaaacttgtcatgaaaaattgaaaacaatcaacatggcattgtcctagagcctaacaggcaa |
408 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954822 |
taaggccaccacgtgaaaatttacacctttaccgagccaaaacttctcatgaaaaattgaaaacaatcaacatggcattgtcctagagcctaacaggcaa |
38954723 |
T |
|
| Q |
409 |
gccaaaattgtggaatgtcctgatagttccatcactgccagctgctactattgttagaccccatgtttctgatatattccttccatggctactatcttcg |
508 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954722 |
gccaaaattgtggaatgtcttgatagttccatcactgccagctgctactattgttagaccccatgtttctgatatattccttccatggctactatcttcg |
38954623 |
T |
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| Q |
509 |
tgacataaattttgatgatcacattcatctt |
539 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
38954622 |
tgacataaattttgatgatcacattcatctt |
38954592 |
T |
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