View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_high_20 (Length: 548)

Name: NF1318_high_20
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_high_20
NF1318_high_20
[»] chr1 (9 HSPs)
chr1 (249-458)||(49714284-49714493)
chr1 (257-453)||(49683038-49683234)
chr1 (257-450)||(49710650-49710844)
chr1 (249-453)||(49687943-49688148)
chr1 (1-140)||(49726317-49726457)
chr1 (263-416)||(49215347-49215500)
chr1 (263-428)||(49728511-49728676)
chr1 (257-453)||(49725064-49725260)
chr1 (190-244)||(49726275-49726329)
[»] chr6 (6 HSPs)
chr6 (275-411)||(31201386-31201522)
chr6 (269-408)||(31189573-31189712)
chr6 (290-411)||(31214165-31214286)
chr6 (266-411)||(31224434-31224579)
chr6 (276-399)||(31145522-31145645)
chr6 (276-399)||(31171835-31171958)
[»] scaffold0394 (1 HSPs)
scaffold0394 (279-329)||(2115-2165)
[»] chr7 (3 HSPs)
chr7 (254-324)||(33305159-33305229)
chr7 (279-315)||(31608433-31608469)
chr7 (281-329)||(31618445-31618493)
[»] chr4 (1 HSPs)
chr4 (279-329)||(15063369-15063419)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 249 - 458
Target Start/End: Complemental strand, 49714493 - 49714284
Alignment:
Q  249 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 348  Q
    |||| |||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| || |||||||| |||| ||||||||||||||||||    
T  49714493 caaatatggatacaatgctttcttttcttggacatactttagcaagtccgaaatctgaaattttaggacagaaatcttcatcaagtaatatattatgagg 49714394  T
Q  349 ttttatgtcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatcc 448  Q
    ||| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||    
T  49714393 tttaatgtcaaaatgtaagattctagtgttacagcctctgtgcaagtactctaacccacgagcaacaccaactgcaatatcatacaatgttttgcaatcc 49714294  T
Q  449 aattgatgat 458  Q
    ||||| ||||    
T  49714293 aattggtgat 49714284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 257 - 453
Target Start/End: Complemental strand, 49683234 - 49683038
Alignment:
Q  257 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 356  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | ||||||||||||||||||||||||||    
T  49683234 gatacaatgctttcttttcttggacatattttagcaagtccaaaatctgaaatttttggacacaaatcatcgtcaagtaatatattatgaggttttatgt 49683135  T
Q  357 caaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaattg 453  Q
    |||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  49683134 caaaatgtaagattctagtgttgcagcctctgtgcatgtactctaacccacgagcaacgccaacagcaatatcatacaacattttgcattccaattg 49683038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 257 - 450
Target Start/End: Complemental strand, 49710844 - 49710650
Alignment:
Q  257 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcc-tcatgaagtaatatattatgaggttttatg 355  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||   ||||  ||||||||||||||||||||||||    
T  49710844 gatacaatgctttcttttcttagacatattttagcaagtccaaaatctgaaatttttggacaaaaattaatcatctagtaatatattatgaggttttatg 49710745  T
Q  356 tcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaa 450  Q
    |||||||| || |||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||    
T  49710744 tcaaaatgcaagattctagtgttgcagcctctgtgcaagtactctagtccacgagcaaccccaactgcaatatcatacaatgttttgcaatccaa 49710650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 249 - 453
Target Start/End: Complemental strand, 49688148 - 49687943
Alignment:
Q  249 caaaaatggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgagg 348  Q
    |||| |||||||| || |||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  49688148 caaatatggatacaatgctttcttttctcagacatattttagcaagtccaaaatcagaattttttgggcagaaattctcatcaagtaatatattatgagg 49688049  T
Q  349 ttttatgtcaaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacg-ccaactgcaatatcatacaatgttttgcaatc 447  Q
    |||||||||||||||||| ||||||||||||||||||||  | || ||||| | ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  49688048 ttttatgtcaaaatgtaagattctagtgttgcagcctctacgaaaatactctagtccacgagcaacgcccaactgcaatattatacaatgttttgcaatc 49687949  T
Q  448 caattg 453  Q
    ||||||    
T  49687948 caattg 49687943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 49726457 - 49726317
Alignment:
Q  1 atagtgagtaataaataatgtttcagttgatatgatatactaaatatatgccataagacggaagcagtgcagagaaacagagaatggtcttgctatgcag 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49726457 atagtgagtaataaataatgtttcaattgatatgatatactaaatatatgccataagacggaagcagtggagagaaacagagaatggtcttgctatgcag 49726358  T
Q  101 ccatttttgactgagtgtgtg-tttggcaaggtcataatag 140  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  49726357 ccatttttgactgagtgtgtgttttggcaaggtcataatag 49726317  T

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Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 49215500 - 49215347
Alignment:
Q  263 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 362  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| |||   |||||||||||||||||| ||||||||||||    
T  49215500 atactttcttttcttgggcatattttagcaagtccaaaatctgaaattttcggacaaaaatcatcagctagtaatatattatgaggtcttatgtcaaaat 49215401  T
Q  363 gtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgc 416  Q
    | || ||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  49215400 gcaagattctagtgttacagcctctgtgcaagtactctaatccacgagcaacgc 49215347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 263 - 428
Target Start/End: Complemental strand, 49728676 - 49728511
Alignment:
Q  263 atactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaat 362  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||  || || || ||||| || |  || |||||||||||||||||||| |||||||    
T  49728676 atactttcttttcttggacatacttttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaat 49728577  T
Q  363 gtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatat 428  Q
    |||| ||| |||| ||||| ||| ||||||  ||||| ||||| ||||||||||||| ||||||||    
T  49728576 gtaaaattttagtattgcaacctttgtgcagatactctaatccccgagcaacgccaattgcaatat 49728511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 257 - 453
Target Start/End: Complemental strand, 49725260 - 49725064
Alignment:
Q  257 gatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgt 356  Q
    ||||| ||||||||||||||||  || ||||| |||||||||||||| |||||| | |||  ||||| |||||  |  |  || ||||||||||||||||    
T  49725260 gataccatactttcttttcttgtgcaaatttttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgt 49725161  T
Q  357 caaaatgtaatattctagtgttgcagcctctgtgcaagtactccaatccacgagcaacgccaactgcaatatcatacaatgttttgcaatccaattg 453  Q
    ||||||| || |||||||| ||||||||| |||||| ||| || |  || ||||| || |||| ||| ||||  ||||| |||| ||||||||||||    
T  49725160 caaaatgcaaaattctagtattgcagcctttgtgcaggtattctagccctcgagctacaccaattgcgatatagtacaacgtttggcaatccaattg 49725064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 49726329 - 49726275
Alignment:
Q  190 aaggtcataataggacaagtcaacagtcaacagtggactatcttagtgtatatat 244  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  49726329 aaggtcataataggaaaagtcaacagtcaacagtggactatcttagtatatatat 49726275  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 411
Target Start/End: Original strand, 31201386 - 31201522
Alignment:
Q  275 cttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctag 374  Q
    |||||||| | ||| |||||||||||||||||||| ||||| || |||| |||||  |  |  |||||||| ||||||||||| |||||||| |||| ||    
T  31201386 cttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggttttatgtcgaaatgtaaaattcgag 31201485  T
Q  375 tgttgcagcctctgtgcaagtactccaatccacgagc 411  Q
    || | || ||||| ||||||||||| | |||||||||    
T  31201486 tggtacatcctctatgcaagtactctagtccacgagc 31201522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 269 - 408
Target Start/End: Original strand, 31189573 - 31189712
Alignment:
Q  269 tcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaata 368  Q
    |||||| ||||||| | ||| |||||||||||||||||||||||||| || |||| |||||  |  |  || ||||| ||||||||||| |||||||| |    
T  31189573 tctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggttttatgtcgaaatgtaaaa 31189672  T
Q  369 ttctagtgttgcagcctctgtgcaagtactccaatccacg 408  Q
    |||| ||| | || ||||| ||||||||||| | ||||||    
T  31189673 ttcttgtggtacatcctctatgcaagtactctagtccacg 31189712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 411
Target Start/End: Complemental strand, 31214286 - 31214165
Alignment:
Q  290 gcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagtgttgcagcctctgt 389  Q
    ||||||||||||||||| || ||||| || ||||  ||||  | ||| |||||||| |||||||| ||||||||||| |||| |||  |||| ||||| |    
T  31214286 gcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggttttatatcaaaatgtaaaattcgagtactgcatcctctat 31214187  T
Q  390 gcaagtactccaatccacgagc 411  Q
    ||| ||||||||| || |||||    
T  31214186 gcaggtactccaaccctcgagc 31214165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 411
Target Start/End: Complemental strand, 31224579 - 31224434
Alignment:
Q  266 ctttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgta 365  Q
    |||||||| ||  |||||| ||| |||||||||||||||||||| || || || ||||  ||||  |  |  || || || |||||||||||||||||||    
T  31224579 ctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttttatgtcaaaatgta 31224480  T
Q  366 atattctagtgttgcagcctctgtgcaagtactccaatccacgagc 411  Q
    | ||||||||| | || ||||  ||||||||||| | |||||||||    
T  31224479 aaattctagtggtacatcctccatgcaagtactctagtccacgagc 31224434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 399
Target Start/End: Original strand, 31145522 - 31145645
Alignment:
Q  276 ttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagt 375  Q
    ||||||| | ||| |||||||||||||||||||| ||||| || || |  ||||  |  |  || ||||| |||||||||||||||||||| |||| |||    
T  31145522 ttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagt 31145621  T
Q  376 gttgcagcctctgtgcaagtactc 399  Q
    | | || ||||| |||||||||||    
T  31145622 ggtacatcctctatgcaagtactc 31145645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 399
Target Start/End: Original strand, 31171835 - 31171958
Alignment:
Q  276 ttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcatgaagtaatatattatgaggttttatgtcaaaatgtaatattctagt 375  Q
    ||||||| | ||| |||||||||||||||||||| ||||| || || |  ||||  |  |  || ||||| |||||||||||||||||||| |||| |||    
T  31171835 ttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggttttatgtcaaaatgtaaaattcgagt 31171934  T
Q  376 gttgcagcctctgtgcaagtactc 399  Q
    | | || ||||| |||||||||||    
T  31171935 ggtacatcctctatgcaagtactc 31171958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 2115 - 2165
Alignment:
Q  279 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 329  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  2115 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 33305229 - 33305159
Alignment:
Q  254 atggatactatactttcttttcttggacatattttagcaagtccaaaatctgaaatttttgggcagaaatc 324  Q
    |||||||| || || || || ||| ||||||||| ||| |||||||||||||| ||||||||||| |||||    
T  33305229 atggatacaatgctatccttcctttgacatatttgagctagtccaaaatctgagatttttgggcaaaaatc 33305159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 31608433 - 31608469
Alignment:
Q  279 gacatattttagcaagtccaaaatctgaaatttttgg 315  Q
    ||||||||||||||||||||||||| || ||||||||    
T  31608433 gacatattttagcaagtccaaaatcagatatttttgg 31608469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 31618445 - 31618493
Alignment:
Q  281 catattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 329  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| ||||    
T  31618445 catattttagctagtccaaaatctgagatttttggacaaaaatcttcat 31618493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 15063419 - 15063369
Alignment:
Q  279 gacatattttagcaagtccaaaatctgaaatttttgggcagaaatcctcat 329  Q
    |||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  15063419 gacatattttagcaagaccaaaatcagatatttttgggcaaaaatcttcat 15063369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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