View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_3 (Length: 726)
Name: NF1318_high_3
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 352 - 717
Target Start/End: Original strand, 23116714 - 23117079
Alignment:
| Q |
352 |
aacaatagcaaacataacaacaaaaccacatctcaatgtggaagatagtttgtggctaaatatgcaacaacactaagaaacttcatattattattcaatg |
451 |
Q |
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| T |
23116714 |
aacaatagcaaacataacaacaaaaccacatctcaatgtggaagatagtttgtggctaaatatgcaacaacactaagaaacttcatattattattcaatg |
23116813 |
T |
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| Q |
452 |
tagaaagagtagacttaactaacttttctttagccaaggcatcttcacatgcttgaggtccatcaccagcaattttagcatcatagtttgcagatattgg |
551 |
Q |
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| T |
23116814 |
tagaaagagtagacttaactatcttttctttagccaaggcatcttcacatgcttgaggtccatcaccagcaattttagcatcatagtttgcagatattgg |
23116913 |
T |
|
| Q |
552 |
atcttcatttaactcaattaacgagcttctaaatgatgcaaccaatccattgtaatcattggttgcacattgtttgatggcttgtgaagaaggttgttct |
651 |
Q |
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| T |
23116914 |
atcttcatttaactcaactaacgagcttctaaatgatgcaaccaatccattgtaatcattggttgcacattgtttgatggcttttgaagaaggttgttct |
23117013 |
T |
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| Q |
652 |
ttcatcaatgttttgaggtaattttggccttttgttgccttctctattgccatctctaagaataat |
717 |
Q |
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| T |
23117014 |
ttcatcaatgttttgaggtaattttggccttttattgccttctctattgccatctctaagaataat |
23117079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 23116371 - 23116589
Alignment:
| Q |
32 |
atattgattgtgttgaatctaacaagtggttataagcataattttaatttctctttagttaagaaagagcacttgaattcgctttttcttatctttgttg |
131 |
Q |
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| T |
23116371 |
atattgattgtgttgaatctaacaagtggttataagcataattttaatttctctttagttaagaaagagcacttgaattcgctttttcttatctttgttg |
23116470 |
T |
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| Q |
132 |
agttttgcaatgattttacggtgtcaattgcgccaaaattatttcataaaatatggttctgaatcttcaaaaatacgtttttgcttgacaggacggctgt |
231 |
Q |
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| T |
23116471 |
agtttagcaatgattttacggtgtcaattgcgccaaaattatttcataaaatatggttctgaatcttcaaaaatacgtttttgcttgacaggacggctgt |
23116570 |
T |
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| Q |
232 |
aatcagtctcagtgagtgg |
250 |
Q |
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| T |
23116571 |
aatcagtgtcagtgagtgg |
23116589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 332
Target Start/End: Original strand, 23116642 - 23116672
Alignment:
| Q |
302 |
ttcattttatgcattttgataaatacataga |
332 |
Q |
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| T |
23116642 |
ttcattttatgcattttgataaatacataga |
23116672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 541
Target Start/End: Original strand, 13586112 - 13586172
Alignment:
| Q |
481 |
ttagccaaggcatcttcacatgcttgaggtccatcaccagcaattttagcatcatagtttg |
541 |
Q |
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|||||||||||| ||||||| | |||||||||||||||| |||||||||||||||||| |
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| T |
13586112 |
ttagccaaggcagtgtcacatgttgtaggtccatcaccagcagttttagcatcatagtttg |
13586172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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