View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_31 (Length: 470)
Name: NF1318_high_31
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 267 - 405
Target Start/End: Complemental strand, 16659239 - 16659101
Alignment:
| Q |
267 |
tgttgtttttccaaatttgttttttccccttcattgccatgtatcttaacaacatgtttgttccctgctgtcattaacttttcctcactgtcatgcacta |
366 |
Q |
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| T |
16659239 |
tgttgtttttccaaatttgttttttccccttcattgccatgtaccttaacaacatgttttttccctgctgtcattaacttttcctcactgtcatgcacta |
16659140 |
T |
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| Q |
367 |
aatatttttgacaagttgcatcagaactgcaaccaccga |
405 |
Q |
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| T |
16659139 |
aatatttttgacaagttgcatcagaactgcaaccaccga |
16659101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 16866653 - 16866843
Alignment:
| Q |
22 |
atatgaaagattatttggtttcaaaatttatttatcgaggaaaaatgttaacaactgctcttagaacactctttaaggatcaatattttttcattatgta |
121 |
Q |
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| T |
16866653 |
atatgatagattatttggtttcagaatttatttacggaagaaaaatgttaacaactgctcctagaacactctttaaggatcaatattttttcattatgta |
16866752 |
T |
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| Q |
122 |
ttattatcaataatgttgtttgaagtctcacatagctaaatttaaaatttaaagtaataatcaagtccatttaacaattattttctcctaatattatt |
219 |
Q |
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| T |
16866753 |
taattattaataatgttgtttgaagtctcacattgct-------aaatttaaagtaataatcaaatccatttaacaattactttctcctgatattatt |
16866843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 16659495 - 16659314
Alignment:
| Q |
22 |
atatgaaagattatttggtttcaaaatttatttatcgaggaaaaatgttaacaactgctcttagaacactctttaaggatcaatattttttcattatgta |
121 |
Q |
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| T |
16659495 |
atatgatagattatttggtttcaaaacttatttattgaagggaaatgttaacaactgctcctaaaacactctttaaggatcaatattttttcattatgta |
16659396 |
T |
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| Q |
122 |
ttattatcaataatgttgtttgaagtctcacatagctaaatttaaaatttaaagtaataatcaagtccatttaacaattattttctcct |
210 |
Q |
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| T |
16659395 |
ttattattaataatgttgtttgaagtctcacattgct-------gaatttaaagtaataatcaagtccatttaaccattactttctcct |
16659314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 283 - 405
Target Start/End: Original strand, 16866952 - 16867074
Alignment:
| Q |
283 |
ttgttttttccccttcattgccatgtatcttaacaacatgtttgttccctgctgtcattaacttttcctcactgtcatgcactaaatatttttgacaagt |
382 |
Q |
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| T |
16866952 |
ttgttttttccccttcattgcaatgtaccttaacaacatgttttttccctgctgtcattagcttttcctcactgtcatgcactaaatatttttgacaagt |
16867051 |
T |
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| Q |
383 |
tgcatcagaactgcaaccaccga |
405 |
Q |
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| T |
16867052 |
tgcatcagaactgcaaccaccga |
16867074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 405 - 460
Target Start/End: Original strand, 16867105 - 16867160
Alignment:
| Q |
405 |
aaagcatattcaacttccaaaagcaaagtctatctccaaaccaaaccttgtttcat |
460 |
Q |
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| T |
16867105 |
aaagcatattcaacttccaaaagcaaagtctatctccaaaccaaaccttgtttcat |
16867160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 16659067 - 16659015
Alignment:
| Q |
408 |
gcatattcaacttccaaaagcaaagtctatctccaaaccaaaccttgtttcat |
460 |
Q |
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| T |
16659067 |
gcatattcaacttccaaaagcaaagtctatctccaaaccaaaccttgtttcat |
16659015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 16661249 - 16661196
Alignment:
| Q |
272 |
tttttccaaatttgttttttccccttcattgccatgtatcttaacaacatgttt |
325 |
Q |
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||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||| |
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| T |
16661249 |
tttttccaattttattttttccccttcattgccatgtaccttcacaacatgttt |
16661196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 17707407 - 17707444
Alignment:
| Q |
267 |
tgttgtttttccaaatttgttttttccccttcattgcc |
304 |
Q |
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| T |
17707407 |
tgttgtttttctaattttgttttttccccttcattgcc |
17707444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 11982884 - 11982936
Alignment:
| Q |
273 |
ttttccaaatttgttttttccccttcattgccatgtatcttaacaacatgttt |
325 |
Q |
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| T |
11982884 |
ttttccaattttgttttttccccttcattgtcatgtaccttaccaacttgttt |
11982936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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