View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_33 (Length: 469)
Name: NF1318_high_33
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 29 - 387
Target Start/End: Complemental strand, 53032371 - 53032010
Alignment:
| Q |
29 |
ataaacacagatgcgtttgaacctagacttgatcattggtagttgttgttcaatttccattaagaggaaaattaaaagaattaagtatgattagttttgg |
128 |
Q |
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| T |
53032371 |
ataaacacagatgcgtttgaacctagacttgatcattgatagttgttgttcaatttccattaagaggaaaattaaaagaattaagtatgattagttttgg |
53032272 |
T |
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| Q |
129 |
ttacgaagagagttaaagaagggacaagaaaagagaataggatagaacgtg-------tgtttattatgtatgtagtagtaatgaagtgatgtgaaaagg |
221 |
Q |
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| T |
53032271 |
ttatgaagagagttaaagaagggacaagaaaagagaataggatagaaagtggtgaacgtgtgt-ttatgtatgtagtagt---gaagtgatgtgaaaagg |
53032176 |
T |
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| Q |
222 |
gaataatgaggaaaagaaagcggaacaaggaagcaaagagtcagcaatcactttgaaatcccaatatccaaaagtgaataacaatttgtgtcattgctta |
321 |
Q |
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| T |
53032175 |
gaataatgaagaaaagaaagcagaacaaggaagcaaagagtcagcaatcactttgaaatcccaatatccaaaagtgaataacaatttgtgtcattgctta |
53032076 |
T |
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| Q |
322 |
tccctctttatagtatctctagttttgctttctactatttctaaatttaatttaataatgagagag |
387 |
Q |
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| T |
53032075 |
tccctctttatagtatctctagttttactttctactatttctaaatttaatttaataatgagagag |
53032010 |
T |
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