View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_high_34 (Length: 467)

Name: NF1318_high_34
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_high_34
NF1318_high_34
[»] chr6 (13 HSPs)
chr6 (80-438)||(23258026-23258384)
chr6 (80-436)||(23247640-23247994)
chr6 (80-436)||(23252052-23252406)
chr6 (207-438)||(23266581-23266812)
chr6 (318-438)||(23290012-23290132)
chr6 (315-436)||(23587170-23587291)
chr6 (333-438)||(23391481-23391586)
chr6 (80-174)||(23266804-23266898)
chr6 (332-434)||(23583288-23583390)
chr6 (336-436)||(23634204-23634304)
chr6 (348-438)||(23283699-23283789)
chr6 (336-430)||(23507030-23507124)
chr6 (318-436)||(23594236-23594354)


Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 80 - 438
Target Start/End: Complemental strand, 23258384 - 23258026
Alignment:
Q  80 ctgttgccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaattgcc 179  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258384 ctgttaccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaattgcc 23258285  T
Q  180 acttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatctt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258284 acttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatctt 23258185  T
Q  280 cttcgtatgacatgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccaccc 379  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258184 cttcgtatgacatgtcaactccgaattcggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccaccc 23258085  T
Q  380 gatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaac 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258084 gatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaac 23258026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 80 - 436
Target Start/End: Complemental strand, 23247994 - 23247640
Alignment:
Q  80 ctgttgccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaattgcc 179  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||  ||||| ||    
T  23247994 ctgttaccttattctttccttcaaacacaacaatgcttccctatatatataacacaccttactcttcattctcttaaaacaaactctctc--caattccc 23247897  T
Q  180 acttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatctt 279  Q
    ||||| ||||| ||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||| ||  | ||    
T  23247896 actttacctctcaaaaccattttccactctatccaacacatacatatgattagtactaacaactcttcctattcacactccatttcctcaaaagattttt 23247797  T
Q  280 cttcgtatgacatgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccaccc 379  Q
    || | |  |||   ||| | |||  ||  ||||| || |||||  | |||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  23247796 ctcccttcgacgcatcatcaccgggttctgaggtgcggttagcatcaagtaacccgaagaagcgagcagggaggaagatatttaaggaaactcgccaccc 23247697  T
Q  380 gatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggga 436  Q
    | | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  23247696 ggtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgaggga 23247640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 80 - 436
Target Start/End: Complemental strand, 23252406 - 23252052
Alignment:
Q  80 ctgttgccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaattgcc 179  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| ||    
T  23252406 ctgttgccttattctttccttcaaacacaactatgcttccctatatatataacacaccttactcttcattctcttaaaacaaa--ctctctccaattacc 23252309  T
Q  180 acttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatctt 279  Q
    ||||| ||||| ||||| |||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||| |||||| |||||| ||  | ||    
T  23252308 actttacctctcaaaaccattttccactctatccaacacatacatatgataagtactaacaactcttcctattcacactccatttcctcaaaagattttt 23252209  T
Q  280 cttcgtatgacatgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccaccc 379  Q
    || | |  |||   ||| | ||| |||  ||||| || |||||  | || ||||| |||||| |||| ||||||||||| || ||||||||||| |||||    
T  23252208 ctcccttcgacgcatcatcaccggattctgaggtgcggttagcatcaagcaacccgaagaagagagcggggaggaagatatttaaggaaactcgtcaccc 23252109  T
Q  380 gatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggga 436  Q
      | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  23252108 tgtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgaggga 23252052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 207 - 438
Target Start/End: Complemental strand, 23266812 - 23266581
Alignment:
Q  207 tctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatcttcttcgtatgacatgtcaactccgaatt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||| ||  | |  |||   ||| | |    
T  23266812 tctctccaacacatacatatgtttactactaacaactcttcctattcacactccatttcctcagaagcatcttcttcctactataactcattaccggaat 23266713  T
Q  307 tggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaa 406  Q
     |||| |||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23266712 cggagatacgattagcagctagtaacccgaagaagagagcagggaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaa 23266613  T
Q  407 cttagataaatgggtgtgtgaaatgagggaac 438  Q
    ||||||||||||||| ||||||||||||||||    
T  23266612 cttagataaatgggtttgtgaaatgagggaac 23266581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 318 - 438
Target Start/End: Complemental strand, 23290132 - 23290012
Alignment:
Q  318 ttagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaat 417  Q
    |||||||| |||  |||||| || | ||||||||||||||  || ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23290132 ttagcggcgagttgcccaaaaaaaccagcagggaggaagaagtttaaggagactcgccacccggtgtatagaggtgtgaggaagaggaacttagataaat 23290033  T
Q  418 gggtgtgtgaaatgagggaac 438  Q
    |||||||||||||||||||||    
T  23290032 gggtgtgtgaaatgagggaac 23290012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 315 - 436
Target Start/End: Complemental strand, 23587291 - 23587170
Alignment:
Q  315 cgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagata 414  Q
    ||||||||||| | || ||| |||||||| |||||||||||||  ||||||||||||||||||||  | |||||||| ||||||||||||||||||||||    
T  23587291 cgattagcggcaactaccccgaagaagcgtgcagggaggaagaagttcaaggaaactcgccacccagtctatagaggagtgaggaagaggaacttagata 23587192  T
Q  415 aatgggtgtgtgaaatgaggga 436  Q
    ||||||| ||||||||||||||    
T  23587191 aatgggtttgtgaaatgaggga 23587170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 333 - 438
Target Start/End: Complemental strand, 23391586 - 23391481
Alignment:
Q  333 ccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatga 432  Q
    ||||||||||| |||||||||||||  |||||||| |||||||||||| | ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  23391586 ccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtatataggggtgtgaggaaaagaaacttagataaatgggtgtgtgaaatga 23391487  T
Q  433 gggaac 438  Q
    ||||||    
T  23391486 gggaac 23391481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 23266898 - 23266804
Alignment:
Q  80 ctgttgccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaa 174  Q
    ||||| |||||||||||||||||||  ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  23266898 ctgttaccttattctttccttcaaaaccaagtatgcttcactatatatgtaacacaccttactcttcattctcttaaaaacaactatctctccaa 23266804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 332 - 434
Target Start/End: Complemental strand, 23583390 - 23583288
Alignment:
Q  332 cccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatg 431  Q
    |||||||||||| |||||||||||||  |||||||| |||||||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  23583390 cccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtctataggggtgtaaggaagaggaacttagataaatgggtttgtgaaatg 23583291  T
Q  432 agg 434  Q
    |||    
T  23583290 agg 23583288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 336 - 436
Target Start/End: Complemental strand, 23634304 - 23634204
Alignment:
Q  336 aagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggg 435  Q
    |||||||| |||||||||||||  |||||||| || ||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  23634304 aagaagcgtgcagggaggaagaagttcaaggagacacgccacccggtgtacaggggtgtgaggaggaggaacttagataaatgggtgtgtgaaatgaggg 23634205  T
Q  436 a 436  Q
    |    
T  23634204 a 23634204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 348 - 438
Target Start/End: Complemental strand, 23283789 - 23283699
Alignment:
Q  348 gggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaac 438  Q
    ||||||||||  || ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23283789 gggaggaagaagtttaaggagactcgccacccggtgtataggggtgtgaggaagaggaacttagataaatgggtttgtgaaatgagggaac 23283699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 23507124 - 23507030
Alignment:
Q  336 aagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaat 430  Q
    |||||||| | |||||||||||  ||||||||||||||||||||| ||||||| ||||||||||  |||||| ||||||||||||||||||||||    
T  23507124 aagaagcgtggagggaggaagaaattcaaggaaactcgccacccggtgtataggggtgtgaggagtaggaacctagataaatgggtgtgtgaaat 23507030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 436
Target Start/End: Complemental strand, 23594354 - 23594236
Alignment:
Q  318 ttagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaat 417  Q
    ||||| || |||| |||||||||||| ||| | || ||||  |||||||  ||| |||||||||| ||||| ||||||||||  ||||| |||| |||||    
T  23594354 ttagctgcaagtaccccaaagaagcgtgcatgcagaaagaagttcaaggtgacttgccacccgatctataggggtgtgaggagtaggaatttaggtaaat 23594255  T
Q  418 gggtgtgtgaaatgaggga 436  Q
    |||||||||||||||||||    
T  23594254 gggtgtgtgaaatgaggga 23594236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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