View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_high_35 (Length: 466)

Name: NF1318_high_35
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_high_35
NF1318_high_35
[»] chr2 (15 HSPs)
chr2 (11-437)||(39492299-39492717)
chr2 (163-269)||(39132114-39132220)
chr2 (163-265)||(2363527-2363629)
chr2 (155-264)||(39605075-39605184)
chr2 (163-206)||(39470309-39470352)
chr2 (17-124)||(39470851-39470958)
chr2 (186-265)||(39372209-39372288)
chr2 (186-265)||(39379517-39379596)
chr2 (11-110)||(39125704-39125804)
chr2 (175-265)||(39188303-39188393)
chr2 (163-265)||(39386312-39386413)
chr2 (192-269)||(39126259-39126336)
chr2 (164-265)||(39179698-39179798)
chr2 (166-211)||(39503154-39503199)
chr2 (314-369)||(39132587-39132645)
[»] chr4 (1 HSPs)
chr4 (173-265)||(33153107-33153199)
[»] chr3 (1 HSPs)
chr3 (192-259)||(51576903-51576970)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 39492717 - 39492299
Alignment:
Q  11 cagagaggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492717 cagagaggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaaca 39492618  T
Q  111 cattcccttgtaaacgagttaacagatttatcgcagattcgcagaactagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcaga 210  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492617 cattcccttgtaaacgagttaacagatttatcgcaga--------actagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcaga 39492526  T
Q  211 atctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataataacacggctgaaaggcaaatagtatttgtataggaagcacatca 310  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  39492525 atgtcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataataacacggctgaaaggtaaatagtattggtataggaagcacatca 39492426  T
Q  311 tgtattaacagggttctctctattcctctttgttgagatagtgtagtatttgtttagatattattccccattagttgattcttttccctaatttagagat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39492425 tgtattaacagggttctctctattcctctttgttgagatagtgtagtatttgtttagatattattcccctttagttgattcttttccctaatttagagat 39492326  T
Q  411 tgagcaggttaagcatcatgtatataa 437  Q
    |||||||||||||||||||||||||||    
T  39492325 tgagcaggttaagcatcatgtatataa 39492299  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 39132114 - 39132220
Alignment:
Q  163 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 262  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||  |||| |||||| ||||||||||||| || |||| | |||||||||||    
T  39132114 agttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtaacaatatattgaagatggtagactaatttgtgcata 39132213  T
Q  263 taataac 269  Q
    | |||||    
T  39132214 ttataac 39132220  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 2363527 - 2363629
Alignment:
Q  163 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 262  Q
    ||||||||| ||||||||||||  |||| |||| |||||||||||||||||| ||||  ||| ||||||||||||| |||||||||||||| || |||||    
T  2363527 agttttgatgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcatctgcgcata 2363626  T
Q  263 taa 265  Q
    |||    
T  2363627 taa 2363629  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 39605075 - 39605184
Alignment:
Q  155 aactagtcagttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatt 254  Q
    ||||||| ||||||| | ||||||||||||| |||| |||| ||||||||||||||| || ||||  ||| | ||| |||||||||||| ||||||||||    
T  39605075 aactagttagttttgttgaagtgaaattttggtgcaccttgcagattttgttcagaaacttatcatgaagaaacaaaatattgaagctgctagattcatt 39605174  T
Q  255 tgtgcatata 264  Q
     |||| ||||    
T  39605175 cgtgcttata 39605184  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 39470352 - 39470309
Alignment:
Q  163 agttttgataaagtgaaattttgttgcagcttgtagattttgtt 206  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  39470352 agttatgataaagtgaaattttgttgcaccttgtagattttgtt 39470309  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 39470958 - 39470851
Alignment:
Q  17 ggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaacacattcc 116  Q
    |||||| ||| ||||||||||||  || |||||| ||| ||| |||| | |||||||||||||| || || ||||||| ||||||| |||||||  || |    
T  39470958 ggcaaatagtatttttactggaagtagtgagtgtcatcttccaaatacgcaacaacctaatgtatagttacgtggtagcgaaaacctgctaacatgtttc 39470859  T
Q  117 cttgtaaa 124  Q
    ||||||||    
T  39470858 cttgtaaa 39470851  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 39372209 - 39372288
Alignment:
Q  186 ttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 265  Q
    ||||| |||| |||||||||| ||||||| || || | | |||||| | ||| ||||||||||||||||| |||||||||    
T  39372209 ttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattcatttctgcatataa 39372288  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 39379596 - 39379517
Alignment:
Q  186 ttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 265  Q
    ||||| |||| |||||||||| ||||||| ||||  | | |||||| | ||| |||||||||||||| ||||||||||||    
T  39379596 ttgcaccttgcagattttgttgagaatcttatcaagaggaagcaatttgttgtagctgttagattcagttgtgcatataa 39379517  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 39125704 - 39125804
Alignment:
Q  11 cagagaggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaaccta--atgtaaagatatgtggtagagaaaacccgctaa 108  Q
    |||||||||||| |||||||||||| ||| | | |||||| ||| ||| |||| | |||||||||  ||||||||||||||| ||| | ||||| |||||    
T  39125704 cagagaggcaaatagtgtttttactagaaccggtgagtgtcatcatcc-aatatgcaacaacctaatatgtaaagatatgtgctagcggaaacctgctaa 39125802  T
Q  109 ca 110  Q
    ||    
T  39125803 ca 39125804  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 39188393 - 39188303
Alignment:
Q  175 gtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 265  Q
    |||| ||||| ||||| || | ||||||||| |||| ||| ||||  ||  ||||||||  ||||||||||||||||| ||||||||||||    
T  39188393 gtgagattttcttgcacctggcagattttgtacagagtcttatcaagaaacagcaatatgatgaagctgttagattcagttgtgcatataa 39188303  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 265
Target Start/End: Complemental strand, 39386413 - 39386312
Alignment:
Q  163 agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata 262  Q
    |||| |||| |||||||||||  ||||| |||  |||||||||| || |||| ||||  | | |||||| | |||||||||||||||||| |||||||||    
T  39386413 agttatgatgaagtgaaatttc-ttgcatcttccagattttgttaagcatcttatcaagaggaagcaatttgttgaagctgttagattcagttgtgcata 39386315  T
Q  263 taa 265  Q
    |||    
T  39386314 taa 39386312  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 39126259 - 39126336
Alignment:
Q  192 cttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataataac 269  Q
    |||| |||||||| | ||||||  ||| | |||| |||| |||| |||| |||| |||||||||||||||||||||||    
T  39126259 cttgcagattttgcttagaatcatatctggaagttgcaacatatggaagttgtttgattcatttgtgcatataataac 39126336  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 39179698 - 39179798
Alignment:
Q  164 gttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatat 263  Q
    |||||||| |||||||||||  ||||| |||| |||||||||| || |||| ||||  | | |||||  | ||| |||||||||||||| ||||||||||    
T  39179698 gttttgatgaagtgaaatttc-ttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattcagttgtgcatat 39179796  T
Q  264 aa 265  Q
    ||    
T  39179797 aa 39179798  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 39503199 - 39503154
Alignment:
Q  166 tttgataaagtgaaattttgttgcagcttgtagattttgttcagaa 211  Q
    |||||| |||||||||||||||| | |||| |||||||||||||||    
T  39503199 tttgatgaagtgaaattttgttgtaccttgcagattttgttcagaa 39503154  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 369
Target Start/End: Original strand, 39132587 - 39132645
Alignment:
Q  314 attaacagggttctctctattcct---ctttgttgagatagtgtagtatttgtttagat 369  Q
    ||||||||| ||||||||||||||   ||||||||||||| | |||| |||||||||||    
T  39132587 attaacaggattctctctattcctcctctttgttgagatattttagtgtttgtttagat 39132645  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 33153107 - 33153199
Alignment:
Q  173 aagtgaaattttgttgcagcttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgcatataa 265  Q
    |||||||| ||| ||||| |||| |||||||||||||||||| ||| | ||| ||||| |||||||||||||||||||||| ||||| |||||    
T  33153107 aagtgaaactttattgcaacttgcagattttgttcagaatcttatccggaagaagcaacatattgaagctgttagattcatatgtgcttataa 33153199  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 51576903 - 51576970
Alignment:
Q  192 cttgtagattttgttcagaatctcatcagaaagtagcaatatattgaagctgttagattcatttgtgc 259  Q
    |||| |||||||||||||||||| |||   ||  ||||| || |||||||||||||||||||||||||    
T  51576903 cttgcagattttgttcagaatcttatcgataatcagcaacatgttgaagctgttagattcatttgtgc 51576970  T

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