View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_high_37 (Length: 460)

Name: NF1318_high_37
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_high_37
NF1318_high_37
[»] chr8 (2 HSPs)
chr8 (273-447)||(36935907-36936078)
chr8 (273-444)||(30272445-30272613)
[»] scaffold0129 (1 HSPs)
scaffold0129 (117-273)||(30323-30479)
[»] chr4 (1 HSPs)
chr4 (273-452)||(3619326-3619493)
[»] chr3 (1 HSPs)
chr3 (343-452)||(33811668-33811777)
[»] scaffold0046 (1 HSPs)
scaffold0046 (172-261)||(75397-75483)
[»] chr6 (2 HSPs)
chr6 (172-261)||(28469557-28469643)
chr6 (172-261)||(34734091-34734177)
[»] chr1 (1 HSPs)
chr1 (172-261)||(24966076-24966162)
[»] chr5 (1 HSPs)
chr5 (399-441)||(27002939-27002981)
[»] chr2 (1 HSPs)
chr2 (215-273)||(21795098-21795156)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 273 - 447
Target Start/End: Original strand, 36935907 - 36936078
Alignment:
Q  273 tcctaagtaatttcttatttgtacaacaacaatagtggaagagtaactaagctatttcaattgcaatgttcttcaaacaagggttgagcaagataatgta 372  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935907 tcctaagtaatttcttatttgtacaacaaca---gtggaagagtaactaagctatttcaattgcaatgttcttcaaacaagggttgagcaagataatgta 36936003  T
Q  373 gaaggatcatacaaagcaggaagaagatacttccttccattatcaccatgagcattgaaactagcaccagtagta 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36936004 gaaggatcatacaaagcaggaagaagatacttccttccattatcaccatgagcattgaaactagcaccagtagta 36936078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 273 - 444
Target Start/End: Original strand, 30272445 - 30272613
Alignment:
Q  273 tcctaagtaatttcttatttgtacaacaacaatagtggaagagtaactaagctatttcaattgcaatgttcttcaaacaagggttgagcaagataatgta 372  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272445 tcctaagtaatttcttatttgtacaa---caatagtggaagagtaactaagctatttcaattgcaatgttcttcaaacaagggttgagcaagataatgta 30272541  T
Q  373 gaaggatcatacaaagcaggaagaagatacttccttccattatcaccatgagcattgaaactagcaccagta 444  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272542 gaaggatcatacaaagcaagaagaagatacttccttccattatcaccatgagcattgaaactagcaccagta 30272613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 117 - 273
Target Start/End: Original strand, 30323 - 30479
Alignment:
Q  117 ttaggtttttactacaaattcatggcagcaccttaatgctacataatcttctatgatgatatatttttcaaattcatactttagttgattatatttaatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30323 ttaggtttttactacaaattcatggcagcaccttaatgctacataatcttctatgatgatatatttttcaaattcatactttagttgattatatttaatg 30422  T
Q  217 catattgatcaacagtctataacaaacccacgcgatagcgtgggtagaaagtctagt 273  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30423 catattgatcaacagtctataacaaacccacgcgaaagcgtgggtagaaagtctagt 30479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 273 - 452
Target Start/End: Original strand, 3619326 - 3619493
Alignment:
Q  273 tcctaagtaatttcttatttgtacaacaacaatagtggaagagtaactaagctatttcaattgcaatgttcttcaaacaagggttgagcaagataatgta 372  Q
    |||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3619326 tcctaagtaatttcttatttgtacaagaaca---gtggaagagtaactaagctatttcaattgcaatgttcttcaaacaagggttgagcaaaataatgta 3619422  T
Q  373 gaaggatcatacaaagcaggaagaagatacttccttccattatcaccatgagcattgaaactagcaccagtagtataatc 452  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| ||||    
T  3619423 gaaggatcatacaaagcaggaagaagatacttcctt---------ccatgagcattgaaactagcaccagtagtagaatc 3619493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 33811777 - 33811668
Alignment:
Q  343 cttcaaacaagggttgagcaagataatgtagaaggatcatacaaagcaggaagaagatacttccttccattatcaccatgagcattgaaactagcaccag 442  Q
    |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33811777 cttcaaacgagagtagagcaagataatgtagaaggatcatacaaagcaggaagaagatactttcttccattatcaccatgagcattgaaactagcaccag 33811678  T
Q  443 tagtataatc 452  Q
    ||||| ||||    
T  33811677 tagtagaatc 33811668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 75483 - 75397
Alignment:
Q  172 atgatatatttttcaaattcatactttagttgattatatttaatgcatattgatcaacagtctataacaaacccacgcgatagcgtgggt 261  Q
    ||||||||||||||||||| ||   | |||||||| || | ||  |||||||||||| |||||||||||||||| |||||||||| ||||    
T  75483 atgatatatttttcaaattgat---tgagttgattgtaatcaaaacatattgatcaatagtctataacaaacccgcgcgatagcgggggt 75397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 28469557 - 28469643
Alignment:
Q  172 atgatatatttttcaaattcatactttagttgattatatttaatgcatattgatcaacagtctataacaaacccacgcgatagcgtgggt 261  Q
    ||||||||||||||||||| ||   | |||||||| || | ||  |||||||||||| |||||||||||||||| |||||||||| ||||    
T  28469557 atgatatatttttcaaattgat---tgagttgattgtaatcaaaacatattgatcaatagtctataacaaaccctcgcgatagcgggggt 28469643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 34734177 - 34734091
Alignment:
Q  172 atgatatatttttcaaattcatactttagttgattatatttaatgcatattgatcaacagtctataacaaacccacgcgatagcgtgggt 261  Q
    ||||||||||||||||||| ||   | |||||||| || | ||  |||||||||||| |||||||||||||||| |||||||||| ||||    
T  34734177 atgatatatttttcaaattgat---tgagttgattgtaatcaaaacatattgatcaatagtctataacaaaccctcgcgatagcgggggt 34734091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 24966162 - 24966076
Alignment:
Q  172 atgatatatttttcaaattcatactttagttgattatatttaatgcatattgatcaacagtctataacaaacccacgcgatagcgtgggt 261  Q
    ||||||||||||||||||| ||   | |||||||| || | ||  |||||||||||| |||||||||||||||| |||||||||| ||||    
T  24966162 atgatatatttttcaaattgat---tgagttgattgtaatcaaaacatattgatcaatagtctataacaaacccgcgcgatagcgggggt 24966076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 27002981 - 27002939
Alignment:
Q  399 atacttccttccattatcaccatgagcattgaaactagcacca 441  Q
    ||||||||||||||||||||||| ||||||| | |||||||||    
T  27002981 atacttccttccattatcaccattagcattgtagctagcacca 27002939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 21795156 - 21795098
Alignment:
Q  215 tgcatattgatcaacagtctataacaaacccacgcgatagcgtgggtagaaagtctagt 273  Q
    |||||||||| | | ||||||||||| |||| |||||||||||||||  ||||||||||    
T  21795156 tgcatattgaacgagagtctataacagacccgcgcgatagcgtgggtttaaagtctagt 21795098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University