View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_40 (Length: 426)
Name: NF1318_high_40
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 100 - 360
Target Start/End: Original strand, 9288230 - 9288491
Alignment:
| Q |
100 |
ctctgaaattctccatcttgaaaagtggtggtagataatggctcgtataggagcgcataaggaaatcacttcttctatttgagtactcaagctaagagtc |
199 |
Q |
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| T |
9288230 |
ctctgaaattctccatcttgaaaagtggtggtagataatggctcgtataggagcgcataaggaaatcacttcttctatttgagtactcaagctaagagtc |
9288329 |
T |
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| Q |
200 |
aaaa-acttgtaacgaaagaggaatatcacattgcatgactagcagtctccacaacaccaccactattgttccttcccctagaacttcgaaagtaatcat |
298 |
Q |
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| T |
9288330 |
aaaagacttgtaactaaagaggaatctcacattgcatgaatagcagtctccacaacaccaccgctattgttccatcccctagaacttcgaaagtaatcat |
9288429 |
T |
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| Q |
299 |
tttaggccaaattttaactatagcttgacatataaaggaatcataatttctgggctaccact |
360 |
Q |
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| T |
9288430 |
tttaggccaaattttaactatagcttgacatataaaggaatcataatttctgggctaccact |
9288491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 9312643 - 9312745
Alignment:
| Q |
163 |
aatcacttcttctatttgagtactcaagctaagagtcaaaa-acttgtaacgaaagaggaatatcacattgcatgactagcagtctccacaacaccacca |
261 |
Q |
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| T |
9312643 |
aatcacttcttctatttgagtactcaagctaagagtcaaaagacttgcaactaaagaggaatctcacattgcatgactagcagtctccacaccaccacca |
9312742 |
T |
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| Q |
262 |
cta |
264 |
Q |
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| T |
9312743 |
cta |
9312745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 265 - 360
Target Start/End: Original strand, 9312930 - 9313025
Alignment:
| Q |
265 |
ttgttccttcccctagaacttcgaaagtaatcattttaggccaaattttaactatagcttgacatataaaggaatcataatttctgggctaccact |
360 |
Q |
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| T |
9312930 |
ttgttccaacccctagaacttctaaagtaatcattttaggccaaattttaactatagctttgcttataaaggaatcacaatttctgggctaccact |
9313025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 3089884 - 3089940
Alignment:
| Q |
355 |
accactgatcatagggtctaactccatttcttcttaattgttaatggctgcttgatt |
411 |
Q |
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| T |
3089884 |
accattgatcatagggtctaactccatttcttcttaattgttaatgcctgcttgatt |
3089940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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