View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_41 (Length: 418)
Name: NF1318_high_41
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_41 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 40 - 390
Target Start/End: Original strand, 39319 - 39662
Alignment:
| Q |
40 |
ccctattgatccaaatttacatagagaaatggattttgtacaatatttatcaattcaaggtgcgtcaacagaagtcccatttactgcttatttatcaaag |
139 |
Q |
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| T |
39319 |
ccctattgatccaaatttacatagagaaatggatcttgtacagtatttatcgattcaaggtgcgtcaacagaagtcccatttactacttatttatcaaag |
39418 |
T |
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| Q |
140 |
agtnnnnnnnnnnnnnncaattacaaaggcatatcaaacccgctctcaaggtcccccgcctgcacctaatgaagannnnnnnctggaatttcaagggtat |
239 |
Q |
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| T |
39419 |
agtaaaaaaaaaa----caattacaaaggcatatcaaacccgctctcaaggtccccctcctgcacctaatgaagatttttttctggaatttcaagggtat |
39514 |
T |
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| Q |
240 |
agcttacgaaagtatgtatgaataatagagaccctttcatgcctaatctctgggcattatgggaataaggatgttgattttgtcgctcgttgttgttctc |
339 |
Q |
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| T |
39515 |
agcttacgaaattatgtatgaataatagagaccctttcatgcctaatctctgggcattatggg-gtaaggatattgattttgtggctcgttgttgt--tc |
39611 |
T |
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| Q |
340 |
tatgctgtttcagggttttggcctagtcctctagctgccgtatatattttt |
390 |
Q |
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| T |
39612 |
tatgcttttttagggttttggcctagtcctctagctcccgtatatattttt |
39662 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 29478977 - 29478913
Alignment:
| Q |
226 |
aatttcaagggtatagcttacgaaagtatgtatgaataatagagaccctttcatgcctaatctct |
290 |
Q |
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| T |
29478977 |
aatttcaagggtataggttacaaaattttgtatgaataataaagaccctttaaagcctaatctct |
29478913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 24575538 - 24575584
Alignment:
| Q |
256 |
tatgaataatagagaccctttcatgcctaatctctgggcattatggg |
302 |
Q |
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| T |
24575538 |
tatgaacaatagagaccctttaatgcctaatctttgggcactatggg |
24575584 |
T |
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