View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_44 (Length: 408)
Name: NF1318_high_44
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 94 - 393
Target Start/End: Complemental strand, 30935412 - 30935115
Alignment:
| Q |
94 |
cacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgagcaacttagaaaagccacaaattattttgatgaagctcacatt |
193 |
Q |
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| T |
30935412 |
cacttctgacatatttccaaagcagaataaattgaagtggcaaatcttcccctatgagctacttaggaaagccacaaattattttgatgaagctcacatt |
30935313 |
T |
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| Q |
194 |
cttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaaatgaatgaatgaacagacgagataatctctgaatttgtaact |
293 |
Q |
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| T |
30935312 |
cttgaaaagaaaggctctgccactatatattatggtaagcggtcttttacctgaaaaaa--aatgaatgaatagacaagatagtctctgaatttgtaaat |
30935215 |
T |
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| Q |
294 |
atcgttctatttagtctttgaattttttgaaagatcacaatagacgttgggtttattttgcgttattcagtttcatctatccgttaacttcaaacgttat |
393 |
Q |
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| T |
30935214 |
atcgttcaatttagtctttgaatttttcgtaagatcacagtagactttgggtttattttgcgttatttggtttcatctatccgttaacttcaaacgttat |
30935115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 106 - 308
Target Start/End: Complemental strand, 30994309 - 30994106
Alignment:
| Q |
106 |
atttccaaagcagaataaattgaattggcaaatcttcccctatgagcaacttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaa |
205 |
Q |
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| T |
30994309 |
atttccaaagcagagtaaattgaattggcaaatcttcccatatgagcaacttagaaaagccacaaattattttgatgaagctcacattcttgataagaaa |
30994210 |
T |
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| Q |
206 |
agctctgccactatatattatggtaagaagtctttcacctga-aaaaatgaatgaatgaacagacgagataatctctgaatttgtaactatcgttctatt |
304 |
Q |
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| T |
30994209 |
ggctcgcccactgtatattatggtaagaagtgttttacctgataaaaaactttgagtgaatagaaaatttagtctctgagtttgtaactatcgttcaatt |
30994110 |
T |
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| Q |
305 |
tagt |
308 |
Q |
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|||| |
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| T |
30994109 |
tagt |
30994106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 161 - 321
Target Start/End: Complemental strand, 30965507 - 30965348
Alignment:
| Q |
161 |
aaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatattatggtaagaagtctttcacctgaaaaaatgaatgaa |
260 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||| || |||||||| ||| |
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| T |
30965507 |
aaagccacatattattttgatcaagctcacattcttgaaaagagaggctcggccactgtatattatggtaagaagtcttttacatgaaaaaa-atttgag |
30965409 |
T |
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| Q |
261 |
tgaacagacgagataatctctgaatttgtaactatcgttctatttagtctttgaatttttt |
321 |
Q |
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| T |
30965408 |
tgaatagaaaatttagtctctgaatttgtaactattggtcaatttagtttctgaatttttt |
30965348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 395
Target Start/End: Complemental strand, 30994081 - 30994048
Alignment:
| Q |
362 |
agtttcatctatccgttaacttcaaacgttatct |
395 |
Q |
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| T |
30994081 |
agtttcatctctccgttaacttcaaacgttatct |
30994048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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