View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_high_45 (Length: 407)
Name: NF1318_high_45
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 22778722 - 22778870
Alignment:
| Q |
71 |
atataatagtgacggaatgcaaaaacacacacacatgcatacatatatatcggtatcagacaaaaatgtgttacctctataacatctccaacattgataa |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22778722 |
atataatagtgacggaatgcaaaaacacacacacatgcatacctatatattggtatcagacaaaaatgtgttacctctataacatctccaacattgataa |
22778821 |
T |
|
| Q |
171 |
ctagagcatctgatattggtttaaccggtacccaatttcctttgcttct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22778822 |
ctagagcatctgatattggtttaaccggtacccaatttcctttgtttct |
22778870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 22766121 - 22766193
Alignment:
| Q |
142 |
tacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
22766121 |
tacctctataacatctccaacattgacaacaagagcatctgatattggaataactggaacccaatttcctttg |
22766193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 22775637 - 22775709
Alignment:
| Q |
141 |
ttacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttccttt |
213 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
22775637 |
ttacctctattacatctccgacattgacaactagagcatctgatattggagtaacgggtacccaatttccttt |
22775709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 16084250 - 16084177
Alignment:
| Q |
141 |
ttacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttg |
214 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||| ||| || | ||||||||||||||||||||| |
|
|
| T |
16084250 |
ttacctctattgcatctccaacattgacaactagagcatctgctatgggagttaccggtacccaatttcctttg |
16084177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 23278182 - 23278110
Alignment:
| Q |
142 |
tacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttg |
214 |
Q |
| |
|
||||||||| |||||||||| ||||| |||| ||||| || |||||| |||| |||||||||||||||||| |
|
|
| T |
23278182 |
tacctctattacatctccaagattgaccactaaagcatttggtattggattaattggtacccaatttcctttg |
23278110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University