View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_51 (Length: 400)
Name: NF1318_high_51
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 373
Target Start/End: Complemental strand, 40574282 - 40573914
Alignment:
| Q |
9 |
caataatatatttctaaaaagaatcttaaaatttgtaagtgatgttttctttttgacagcatagataagtccataatcatggacatctagnnnnnnnatt |
108 |
Q |
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| T |
40574282 |
caataatatatttctaaaaagaatcttaaaatttttaagtgatgttttgtttttgacagcatagataagtccataatcatggacatctagtttttttatt |
40574183 |
T |
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| Q |
109 |
tcttggct----atgaacgtggcagtcaatggatggaatttccgtgcatgtttaacaagtggtgcaaaaatttccattccatgtggaacaatgatttgac |
204 |
Q |
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| T |
40574182 |
tcttggctatgaatgaacgtggcagtcagtggatggaatttccgtgcatgtttaacaagtggtgcaaacatttccattccatgtggaacaatgatttgat |
40574083 |
T |
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| Q |
205 |
ggccttatctatttttgttttgatccaatcttccacttccatatgctagaatgcatataaatagttcatcacatacatcaaaaactacctagtctgttca |
304 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40574082 |
ggccttatctatttttgttttgattcaatcttccacttccatatgctagaatgcatataaatagttcatcacatacatcaaaaactacctagtctgttca |
40573983 |
T |
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| Q |
305 |
ttacaacacttacaacttactatatacacactagacaaatcaaggaaagcaagaggagagatgcaatct |
373 |
Q |
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| T |
40573982 |
taacaacacttccaacacactatatacacattagacaaatcaaggaaagcaagaggagagatgcaatct |
40573914 |
T |
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