View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_52 (Length: 399)
Name: NF1318_high_52
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 1676620 - 1677001
Alignment:
| Q |
1 |
gagcaggcatataggtgaaaatgctcaaatggtggtcatcaagaatgcagggcatgcattgaacattgaaaagtccaaagaatttgctagacacttgaag |
100 |
Q |
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| T |
1676620 |
gagcaggcatataggtgaaaatgctcaaatggtggtcatcaagaatgcagggcatgcattgaacattgaaaagtccaaagaatttgctagacacttgaag |
1676719 |
T |
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| Q |
101 |
tcattcctcatcgatgcagggtcgcgcccctcctctccacctactttgaaggagcaaattcaaaagacattttggtttgatttcagtaagtcatagtacc |
200 |
Q |
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| T |
1676720 |
tcattcctcatcgatgcagggtcgcgcccctcctctccacctactttgaaggagcaaattcaaaagacattttggtttgatttcagtaagtcatagtacc |
1676819 |
T |
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| Q |
201 |
tgtgtttttggctagggcatcaagatgatgaatatttcaaattcttttagcttctacaaaaagctaaaaccaattaacacatccaattttccaatatatc |
300 |
Q |
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| T |
1676820 |
tgtgtttttggcaagggcatcaagatgatgaatatttcaaattcttttagcttttacaaaaagctaaaaccaattaacacatccaattttccaatatatc |
1676919 |
T |
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| Q |
301 |
ttagtttgtgaagggaattactacttttacttggttggtttattgcaagcaaatgcttagttagaccaagtttatttcttcc |
382 |
Q |
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| T |
1676920 |
ttagtttgtgaagggaattactacttttacttggttggtttattgcaagcaaatgcttagttagaccaagtttatttcttcc |
1677001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 26568386 - 26568442
Alignment:
| Q |
4 |
caggcatataggtgaaaatgctcaaatggtggtcatcaagaatgcagggcatgcatt |
60 |
Q |
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| T |
26568386 |
caggcatttaggggacaatgctcaaatagtggtgatcaagaatgcagggcatgcatt |
26568442 |
T |
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