View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_54 (Length: 395)
Name: NF1318_high_54
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 16723510 - 16723172
Alignment:
| Q |
13 |
gagagagggaggctcttaagactaagatct--gagtcaaatatgcagctgttctcaagtttatgcacaatactgaaaatactcggtcacaagagataaat |
110 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16723510 |
gagagagggaggctcttaagactaagatctctgagtcaaatatgcagctgttctcaagtttatgcacaatactgaaaatactcggtcacaagagataaat |
16723411 |
T |
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| Q |
111 |
gatgataacaaaatgcagctatggagatatgactagatgagaacaaaagcgggtaaaaatgcataccaggggataaacctcttcgatggatgttccaggc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16723410 |
gatgataacaaaatgcagctatggagatatgactagatgagaacaaaagcgggtaaaaatgcataccaggggataaacctcttcgacggatgttccaggc |
16723311 |
T |
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| Q |
211 |
tttatagatacacccggcctcatgccgtgtgacttaatattttggataagttctttccagttgtctgccaacaaaaatcactttcatgaaagtaatataa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16723310 |
tttatagatacacccggcctcatgccgtgtgacttaatattttggataagttctttccagttgtctgccaacaaaaatcactttcatgaaagtaatataa |
16723211 |
T |
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| Q |
311 |
aatgtgggcagaagaaagagagaaaaaatacgagaaaac |
349 |
Q |
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| T |
16723210 |
aatgtgggcagaagaaagagagaaaaaatacgagaaaac |
16723172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 10695624 - 10695332
Alignment:
| Q |
13 |
gagagagggaggctcttaagactaagatct--gagtcaaatatgcagctgttctcaagtttatgcacaata--ctgaaaatactcggtcacaagagataa |
108 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||||| | || || |||||| |||||| ||||||| |
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| T |
10695624 |
gagagagggagaatcttaagactaagatctctgagtcaaatatgtatctgttctcaagtttatgcacaaaagactcaagatactctgtcacaggagataa |
10695525 |
T |
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| Q |
109 |
atgatgataacaaaatgcagctatggagatatgactagatgagaacaaaagcgggtaaaaatgcataccaggggataaacctcttcgatggatgttccag |
208 |
Q |
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||||||||||||||||||||||||| || |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10695524 |
atgatgataacaaaatgcagctatgcaggtatgaccagatgagaacaatagcggg-aaaaatgcataccaggggataaacctcttcgacggatgttccag |
10695426 |
T |
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| Q |
209 |
gctttatagatacacccggcctcatgccgtgtgacttaatattttggataagttctttccagttgtctgccaacaaaaatcactttcatgaaag |
302 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
10695425 |
gctttatcgatacaccaggcctcatgccgtgtgacttaatattttggataagttctttccagttgtctgccaacaaaaattactttcaagaaag |
10695332 |
T |
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