View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_62 (Length: 372)
Name: NF1318_high_62
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_62 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 25 - 372
Target Start/End: Complemental strand, 2487844 - 2487500
Alignment:
| Q |
25 |
cgagtgcttgcgttttatgagtgcatcttttttggttttaatgagtgtcatctgtcgggttctgtcgggtgaactgagtccaacggtaatcgaaaccgac |
124 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2487844 |
cgagtgcttgcgttttaggagtacatcttttttggttttaatgagtgtcatctgtcgagttctgtcggatgaactgagtccaacggtaatcgaaaccgac |
2487745 |
T |
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| Q |
125 |
caaaaaacataggagatcgggtgaatttgagggtgttgtcatggtccttagttgatggctggatactcaattgctcgcgacactgcaagacgaagtaaag |
224 |
Q |
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| T |
2487744 |
caaaaaacataggagatcgagtgaatttgagggtgttgtcatggtccttagttgatggctggatactcaattgctcgcgacactgcaagacgaagtaaag |
2487645 |
T |
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| Q |
225 |
aaaaccattggtagtagtacttggttgtttctttatgaagaagttaagtacttggttgtttagttggaattgatttcactaggattggtgacatggaagt |
324 |
Q |
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| T |
2487644 |
aaaaccattggt---agtacttggttgtttctttatgaagaagttaagtacttggttgtttagttggaattgatttcactaggattggtgacatggaagt |
2487548 |
T |
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| Q |
325 |
ttaagagccgttggatgtaaagcacacatattaagaatttgagtggct |
372 |
Q |
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| T |
2487547 |
ttaagagccgttggatgtaatgcacacatattaagaatttgagtggct |
2487500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 25 - 372
Target Start/End: Complemental strand, 27090430 - 27090086
Alignment:
| Q |
25 |
cgagtgcttgcgttttatgagtgcatcttttttggttttaatgagtgtcatctgtcgggttctgtcgggtgaactgagtccaacggtaatcgaaaccgac |
124 |
Q |
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| T |
27090430 |
cgagtgcttgcgttttaggagtacatcttttttggttttaatgagtgtcatctgtcgagttctgtcggatgaactgagtccaacggtaatcgaaaccgac |
27090331 |
T |
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| Q |
125 |
caaaaaacataggagatcgggtgaatttgagggtgttgtcatggtccttagttgatggctggatactcaattgctcgcgacactgcaagacgaagtaaag |
224 |
Q |
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| T |
27090330 |
caaaaaacataggagatcgagtgaatttgagggtgttgtcatggtccttagttgatggctggatactcaattgctcgcgacactgcaagacgaagtaaag |
27090231 |
T |
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| Q |
225 |
aaaaccattggtagtagtacttggttgtttctttatgaagaagttaagtacttggttgtttagttggaattgatttcactaggattggtgacatggaagt |
324 |
Q |
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| T |
27090230 |
aaaaccattggt---agtacttggttgtttctttatgaagaagttaagtacttggttgtttagttggaattgatttcactaggattggtgacatggaagt |
27090134 |
T |
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| Q |
325 |
ttaagagccgttggatgtaaagcacacatattaagaatttgagtggct |
372 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27090133 |
ttaagagccgttggatgtaatgcacacatattaagaatttgagtggct |
27090086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 19168492 - 19168554
Alignment:
| Q |
288 |
ttggaattgatttcactaggattggtgacatggaagtttaagagccgttggatgtaaagcaca |
350 |
Q |
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| T |
19168492 |
ttggatttggtttcactaggattgctgacatggaagtttagcaaccgttggatttaatgcaca |
19168554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 20501252 - 20501304
Alignment:
| Q |
288 |
ttggaattgatttcactaggattggtgacatggaagtttaagagccgttggat |
340 |
Q |
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| T |
20501252 |
ttggatttggtttcactaggattgctgacatggaagtttagcaaccgttggat |
20501304 |
T |
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