View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_67 (Length: 362)
Name: NF1318_high_67
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_67 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 171 - 347
Target Start/End: Original strand, 23258522 - 23258699
Alignment:
| Q |
171 |
cacttggctcaaaatgaacaaggttattaaaatatcctctttctattttattttatttta--aggcatgttatcaaaatatctattgctgcgtcactata |
268 |
Q |
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| T |
23258522 |
cacttggctcaaaatgaacaaggttatcaaaatatcctctttctattttattttattttataaggcatgttatgaaaatatctac-gctgcgtcactata |
23258620 |
T |
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| Q |
269 |
caaggttattatatgattcagaggaatttactctttttggctctccatccctttcaaacccacatgttattgattgcgc |
347 |
Q |
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| T |
23258621 |
caaggttattatatgattcagaggaatttactatttttggctctccatccctttcaaacccacatgttactgattgcgc |
23258699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23258355 - 23258399
Alignment:
| Q |
1 |
ttgagtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
45 |
Q |
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| T |
23258355 |
ttgagtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
23258399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 23258418 - 23258461
Alignment:
| Q |
66 |
agtgagctatttcccaagttggaggctttgtgattggttatcaa |
109 |
Q |
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| T |
23258418 |
agtgagctatttcccaagttggaggctgtgtgattggttatcaa |
23258461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 23266934 - 23266974
Alignment:
| Q |
69 |
gagctatttcccaagttggaggctttgtgattggttatcaa |
109 |
Q |
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| T |
23266934 |
gagctatttcctaagttggaggctttgtgattggttatcaa |
23266974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 23266874 - 23266911
Alignment:
| Q |
6 |
tttgaaggaaagaataaggtaacaggtagagtatttgt |
43 |
Q |
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| T |
23266874 |
tttgaaggaaagaataaggtaacaggcagagtgtttgt |
23266911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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