View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_79 (Length: 336)
Name: NF1318_high_79
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_79 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 293
Target Start/End: Original strand, 19296223 - 19296511
Alignment:
| Q |
6 |
gagatggcgactaaatctccatgtccatgtaacttattattttaatctacatttatgatctctttagtgtgtttctgatgcttcgattatgttagtcttc |
105 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
19296223 |
gagatggcgattaaatctccatgtccatgtaacttattattttaatctacatttatgatctctttagtgtgtttctgatgctttgattatattagtcttc |
19296322 |
T |
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| Q |
106 |
gtggtgtgtcttattgtagtctatcacaagagtataaatatattcattgaaatgtaagttattggtggcttaaactttagaaaaaggttcgtataattgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19296323 |
gtggtgtgtcttattgtagtctatcacaagagtataaatatattcattgaaatgtgtgttattggtggcttaaactttagaaaaaggttcgtataattgt |
19296422 |
T |
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| Q |
206 |
gatggt-gatcctaaaatgaactattagtatgtgattatcattcggatacaaagcattttctcacttctttgagtttataggtcataac |
293 |
Q |
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|||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19296423 |
gatggtggatgctaaaatgagctattagtatgtgattatcattcagatacaaagcattttctcacttctttgagtttataggtcataac |
19296511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 21980054 - 21980225
Alignment:
| Q |
124 |
gtctatcacaagagtataaatatattcattgaaatgtaagttattggtggcttaaactttagaaaaaggttcgtat-aattgtgatggtg-atcctaaaa |
221 |
Q |
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||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||| |||| ||| ||||||||||||| || |||||| |
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| T |
21980054 |
gtctatcacaagagtataaatat--tcaatgaaatgtatgttattggtggcttaaaatttagaaaaacgttcatattaattgtgatggtggatgctaaaa |
21980151 |
T |
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| Q |
222 |
-tgaactattagtatgtgattatcattcggatacaaagcattttctcacttctttgagtttataggtcataact |
294 |
Q |
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| T |
21980152 |
atgagctattagtatgtgattatcattcaaatacaaagcattttctaactgctttgattttataggtcataact |
21980225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 21979190 - 21979304
Alignment:
| Q |
6 |
gagatggcgactaaatctccatgtccatgtaacttattattttaatctacatttatgatctctttagtgtgtttctgatgcttcgattatgttagtcttc |
105 |
Q |
| |
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|||||||| |||||||||| |||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21979190 |
gagatggctactaaatctctatgtccatataacttattattttcacttacatctatgatctctttagtgtgtttctgatgcttcgattatgttagtctct |
21979289 |
T |
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| Q |
106 |
gtggtgtgtcttatt |
120 |
Q |
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|| |||||||||||| |
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| T |
21979290 |
gtagtgtgtcttatt |
21979304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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