View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_80 (Length: 328)
Name: NF1318_high_80
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_80 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 17315088 - 17315295
Alignment:
| Q |
30 |
tgtgccaataaggatatttattcttctttttctacttgccacctttcagcagagttcttcaactgtatgtgcttgttggttgcagctgaattggattgct |
129 |
Q |
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| T |
17315088 |
tgtgccaataaggatatttattcttctttttctacttgccacctttcagcagagttcttcaactgtatgtgcttgttggttgcagctgaattggattgct |
17315187 |
T |
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| Q |
130 |
catgaaggccaacaaactttccgatctctgtgaatttgagttttctgtcattatgtctaattggaggcctgttccacttctcaatctctgtatatgtctc |
229 |
Q |
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| T |
17315188 |
catgaacgccaacaaactttccgatctctgtgaatttgagttttctgtcattatgtctaattggaggcctgttccacttctcaatctctgtatatgtttc |
17315287 |
T |
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| Q |
230 |
aattttat |
237 |
Q |
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||| |||| |
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| T |
17315288 |
aatcttat |
17315295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 11488207 - 11488069
Alignment:
| Q |
33 |
gccaataaggatattt-attcttctttttctacttgccacctttcagcagagttcttcaactgtatgtgcttgttggttgcagctgaattggattgctca |
131 |
Q |
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||||||| |||||||| |||||||||||||||| || || |||| ||||||||||| ||| ||| | || |||||||||||||||||||||||||||||| |
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| T |
11488207 |
gccaatatggatattttattcttctttttctacgtggcatctttaagcagagttctccaattgtgtttgtttgttggttgcagctgaattggattgctca |
11488108 |
T |
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| Q |
132 |
tgaaggccaacaaactttccgatctctgtgaatttgagttt |
172 |
Q |
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| T |
11488107 |
agaaggccaacaaactttccaa--tctgtgattttgagttt |
11488069 |
T |
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