View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_81 (Length: 327)
Name: NF1318_high_81
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_81 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5856990 - 5857185
Alignment:
| Q |
1 |
cattaaaaatgacaaagtttagttcaacttatgggaagattcttctttctgtttttcttttactatcaaatatttgctttcaatttgcaacatgtggctc |
100 |
Q |
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| T |
5856990 |
cattaaaaatgacaaagtttagttcaacttatgggaaaattcttctttctgtttttcttttactatcaaatatttcctttcaagttgcaacatgtggctc |
5857089 |
T |
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| Q |
101 |
tatagtaaagtttcttcctggatttcaaggaccccttccttttgtgcttgaaactgggtcagttttacacttagctatataattcatggttttaca |
196 |
Q |
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| T |
5857090 |
tatagtaaagtttcttcctggatttcaaggaccccttccttttgtgcttgaaaccgggtcagttttacacttagctatataattcatggttttaca |
5857185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5863783 - 5863981
Alignment:
| Q |
1 |
cattaaaaatgacaaagtttagttcaacttatgggaagattc---ttctttctgtttttcttttactatcaaatatttgctttcaatttgcaacatgtgg |
97 |
Q |
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| T |
5863783 |
cattaaaaatgacaaagttaagttcaacttatgggaaggttcatcttctttctattttgcttttactatcaaatatttgctttcaagttgcaacatgtgg |
5863882 |
T |
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| Q |
98 |
ctctatagtaaagtttcttcctggatttcaaggaccccttccttttgtgcttgaaactgggtcagttttacacttagctatataattcatggttttaca |
196 |
Q |
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| T |
5863883 |
ttctatagtaaagtttcttcctggattccaaggaccccttccttttgcgcttgaaactgggtcagttatacacttagctatataattcatggttttaca |
5863981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 5876838 - 5876951
Alignment:
| Q |
55 |
ttcttttactatcaaatatttgctttcaatttgcaacatgtggctctatagtaaagtttcttcctggatttcaaggaccccttccttttgtgcttgaaac |
154 |
Q |
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||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
5876838 |
ttctttttttatcaaatatttgctttcaagttgctacatgtggctctatagtaaagtttcttcctggattccaaggaccccttccttttgtgcttaaaac |
5876937 |
T |
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| Q |
155 |
tgggtcagttttac |
168 |
Q |
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| T |
5876938 |
cgggtcagttttac |
5876951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 46185426 - 46185375
Alignment:
| Q |
108 |
aagtttcttcctggatttcaaggaccccttccttttgtgcttgaaactgggt |
159 |
Q |
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| T |
46185426 |
aagtatcttcctggttttcaaggaccccttccctttgtactagaaactgggt |
46185375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 6992221 - 6992267
Alignment:
| Q |
113 |
tcttcctggatttcaaggaccccttccttttgtgcttgaaactgggt |
159 |
Q |
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| T |
6992221 |
tcttcctggttttcaaggacctcttccttttgaacttgaaactgggt |
6992267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 7010008 - 7010058
Alignment:
| Q |
113 |
tcttcctggatttcaaggaccccttccttttgtgcttgaaactgggtcagt |
163 |
Q |
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| T |
7010008 |
tcttcctggttttcaagggccacttccttttgaacttgaaactgggtcagt |
7010058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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