View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_high_83 (Length: 326)
Name: NF1318_high_83
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_83 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 314
Target Start/End: Complemental strand, 28518584 - 28518299
Alignment:
| Q |
30 |
cttagcaagatcagtagtaattgaagcaaaagaaaaggaaaggattttatcagtttctgtaaaaccatatttagaagtgacattcttggaatttaac-tt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28518584 |
cttagcaagatcagtagtaattgaagcaaaagaaaaggaaaggattttatcagtttctgtaaaaccatatttagaagtgacattcttggaatttaacatt |
28518485 |
T |
|
| Q |
129 |
gccaaaaacagactctaagaagtttatatataccatttgaaagttaccaaatgaatgagttattacttgcaacttgtttgcttctagcataaaaataatc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28518484 |
gccaaaaacagactctaagaagtttatatataccatttgaaagttaccaaatgaatgagttattacttgcaacttgtttgcttctagcataaaaataatc |
28518385 |
T |
|
| Q |
229 |
aaggttttggtagagaaagcttgtaagaaagattaagaatttctaagtctatccataacataagtcaatgtcacatatggagccta |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28518384 |
aaggttttggtggagaaagcttgtaagaaagattaagaatttctaagtctatccataacataagtcaatgtcacatatggagccta |
28518299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University