View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_high_85 (Length: 319)

Name: NF1318_high_85
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_high_85
NF1318_high_85
[»] chr7 (16 HSPs)
chr7 (95-197)||(35939514-35939622)
chr7 (98-219)||(35982198-35982319)
chr7 (98-219)||(36003610-36003731)
chr7 (95-255)||(36221333-36221499)
chr7 (95-210)||(36226068-36226189)
chr7 (96-173)||(36217436-36217513)
chr7 (148-279)||(35973540-35973677)
chr7 (148-279)||(35994952-35995089)
chr7 (95-175)||(35955221-35955301)
chr7 (95-212)||(35958172-35958295)
chr7 (95-199)||(35946967-35947077)
chr7 (95-177)||(35977627-35977709)
chr7 (95-177)||(35999039-35999121)
chr7 (95-153)||(35965680-35965738)
chr7 (103-172)||(29602936-29603005)
chr7 (103-172)||(29750289-29750358)
[»] chr1 (2 HSPs)
chr1 (103-315)||(18125888-18126106)
chr1 (98-134)||(18118239-18118275)
[»] chr4 (2 HSPs)
chr4 (103-154)||(49340545-49340596)
chr4 (103-154)||(49351909-49351960)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 35939514 - 35939622
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaactttt------atcaccatcaccgtgaggatgtg 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  35939514 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccatcaccgtgaggatgtg 35939613  T
Q  189 gttgcatca 197  Q
    |||||||||    
T  35939614 gttgcatca 35939622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 35982198 - 35982319
Alignment:
Q  98 accaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccgtgaggatgtggttgcatca 197  Q
    ||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  35982198 accaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagcttttatcaccatcaccttgaggatgtggtagcatca 35982297  T
Q  198 aacgcttgataatttcttccct 219  Q
    || ||||||||||||| |||||    
T  35982298 aaagcttgataatttcatccct 35982319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 36003610 - 36003731
Alignment:
Q  98 accaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccgtgaggatgtggttgcatca 197  Q
    ||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  36003610 accaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagcttttatcaccatcaccttgaggatgtggtagcatca 36003709  T
Q  198 aacgcttgataatttcttccct 219  Q
    || ||||||||||||| |||||    
T  36003710 aaagcttgataatttcatccct 36003731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 95 - 255
Target Start/End: Complemental strand, 36221499 - 36221333
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaactttt------atcaccatcaccgtgaggatgtg 188  Q
    ||||||||| ||||||||||||||||||| || || |||||||| || |||||||||||||| ||| ||||      ||| ||||| || |||||||| |    
T  36221499 aacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacacaaatttttgtcaccatctccatctccatgaggatgcg 36221400  T
Q  189 gttgcatcaaacgcttgataatttcttccctgtcacactctctcccgattacacttgaagcgtcaac 255  Q
    ||||||||||| | |||||||||||||||||||||  ||| ||||| || ||||||||||| |||||    
T  36221399 gttgcatcaaaagtttgataatttcttccctgtcattctccctcccaataacacttgaagcatcaac 36221333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 36226068 - 36226189
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcac------catcaccgtgaggatgtg 188  Q
    |||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||| |||||||||||||      ||||||| ||||||||||    
T  36226068 aacaccaattttgcaagtgtggtcttccccaagccaccaattcccactatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtg 36226167  T
Q  189 gttgcatcaaacgcttgataat 210  Q
    | ||||||||| ||||||||||    
T  36226168 gctgcatcaaaagcttgataat 36226189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 36217513 - 36217436
Alignment:
Q  96 acaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccat 173  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  36217513 acaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccat 36217436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 35973540 - 35973677
Alignment:
Q  148 aataacacataaacttttatcacc------atcaccgtgaggatgtggttgcatcaaacgcttgataatttcttccctgtcacactctctcccgattaca 241  Q
    ||||||||| ||||||||||||||      |||||| |||||| |||||||||||| | ||||||||||||||||||| |||  ||| ||||| || |||    
T  35973540 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35973639  T
Q  242 cttgaagcgtcaacattgggataagtcatttctctcct 279  Q
    |||||||| || |||| || || ||||| |||||||||    
T  35973640 cttgaagcatcgacatgggaattagtcaattctctcct 35973677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 35994952 - 35995089
Alignment:
Q  148 aataacacataaacttttatcacc------atcaccgtgaggatgtggttgcatcaaacgcttgataatttcttccctgtcacactctctcccgattaca 241  Q
    ||||||||| ||||||||||||||      |||||| |||||| |||||||||||| | ||||||||||||||||||| |||  ||| ||||| || |||    
T  35994952 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35995051  T
Q  242 cttgaagcgtcaacattgggataagtcatttctctcct 279  Q
    |||||||| || |||| || || ||||| |||||||||    
T  35995052 cttgaagcatcgacatgggaattagtcaattctctcct 35995089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 35955221 - 35955301
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatca 175  Q
    ||||| |||||||||||||||||||| || ||||||||||| || |  |||||||||||||| ||||||||||| ||||||    
T  35955221 aacactaactttgcaagtgtggtctttcccaatcctccaatacctattatgggaataacacacaaacttttatctccatca 35955301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 35958172 - 35958295
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatca------ccgtgaggatgtg 188  Q
    |||||| ||||||||||||| ||||| || || |||||||||||||| || ||||| ||||| | ||| ||||||||||||      ||| |||||||||    
T  35958172 aacaccgactttgcaagtgttgtctttcccaaacctccaattcccactattggaatgacacagagactattatcaccatcaccatctccgcgaggatgtg 35958271  T
Q  189 gttgcatcaaacgcttgataattt 212  Q
    | ||||||||| | ||||||||||    
T  35958272 gctgcatcaaaagattgataattt 35958295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 35946967 - 35947077
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatca------ccgtgaggatgtg 188  Q
    |||||| |||| ||||||||||||||||  || |||||||||||||| || ||||| ||||| | ||| ||||||||||||      |||||||||||||    
T  35946967 aacaccgacttcgcaagtgtggtcttccacaaacctccaattcccactattggaatgacacagagactattatcaccatcaccatcgccgtgaggatgtg 35947066  T
Q  189 gttgcatcaaa 199  Q
    | |||||||||    
T  35947067 gctgcatcaaa 35947077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 35977627 - 35977709
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcacc 177  Q
    |||||| |||||||||  ||||||||||| || |||||||||||||| || ||||| ||||| | ||| ||||||||| ||||    
T  35977627 aacaccgactttgcaatggtggtcttccccaaacctccaattcccactattggaatgacacaaagactattatcaccaccacc 35977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 35999039 - 35999121
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcacc 177  Q
    |||||| |||||||||  ||||||||||| || |||||||||||||| || ||||| ||||| | ||| ||||||||| ||||    
T  35999039 aacaccgactttgcaatggtggtcttccccaaacctccaattcccactattggaatgacacaaagactattatcaccaccacc 35999121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 35965680 - 35965738
Alignment:
Q  95 aacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataac 153  Q
    |||||||| |||||||||||||||||||| || || |||||||| |  |||||||||||    
T  35965680 aacaccaagtttgcaagtgtggtcttccccaagccaccaattcctagtatgggaataac 35965738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 29602936 - 29603005
Alignment:
Q  103 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcacca 172  Q
    |||||||||||| ||||| || || ||||||||||| ||||| ||||||||| | | |||||||| ||||    
T  29602936 ctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttatgacca 29603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 29750358 - 29750289
Alignment:
Q  103 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcacca 172  Q
    |||||||||||| ||||| || || ||||||||||| ||||| ||||||||| | | |||||||| ||||    
T  29750358 ctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttatgacca 29750289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 315
Target Start/End: Original strand, 18125888 - 18126106
Alignment:
Q  103 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatca------ccatcaccgtgaggatgtggttgcatc 196  Q
    |||||| | |||||||||||| || || ||||||||||| |||||||||||| ||| ||||||||||      |||||||| |||||||||| |||||||    
T  18125888 ctttgccaatgtggtcttccccaagccaccaattcccaccatgggaataacagatagacttttatcaccatcaccatcaccatgaggatgtgcttgcatc 18125987  T
Q  197 aaacgcttgataatttcttccctgtcacactctctcccgattacacttgaagcgtcaacattgggataagtcatttctctcctttggactacatgtccgg 296  Q
    ||| |||||||||| |||||||| |||| |||||| || ||||||||  |||| |||||||  |||||||||||||| ||| |||| || |   ||| ||    
T  18125988 aaaagcttgataatctcttccctatcactctctcttcctattacactcaaagcatcaacatcaggataagtcatttccctcttttgcacaatgagtctgg 18126087  T
Q  297 gatcaacattgatggttgc 315  Q
    |||||||||| || |||||    
T  18126088 gatcaacattaatagttgc 18126106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 18118239 - 18118275
Alignment:
Q  98 accaactttgcaagtgtggtcttccctaatcctccaa 134  Q
    |||||||||||||||||||||||||| ||||||||||    
T  18118239 accaactttgcaagtgtggtcttccccaatcctccaa 18118275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 49340596 - 49340545
Alignment:
Q  103 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataaca 154  Q
    |||||||||||| || || ||||||||||||||||| ||||| |||||||||    
T  49340596 ctttgcaagtgtagtttttcctaatcctccaattccaacaataggaataaca 49340545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 49351960 - 49351909
Alignment:
Q  103 ctttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataaca 154  Q
    |||||||||||| ||||| ||||||||||||||||| ||||  |||||||||    
T  49351960 ctttgcaagtgtagtctttcctaatcctccaattccaacaacaggaataaca 49351909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University