View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_86 (Length: 317)
Name: NF1318_high_86
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_86 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 34501875 - 34501600
Alignment:
| Q |
13 |
aatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatac |
112 |
Q |
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|||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34501875 |
aatatatgatatcagtataattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatac |
34501776 |
T |
|
| Q |
113 |
atttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaagtctgctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34501775 |
atttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaagtctgctg |
34501676 |
T |
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| Q |
213 |
taccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaagg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34501675 |
taccatacgctcattgctggatattgcaggctacagaaatttgatatcgctctcaagtcattgactcggatgaagg |
34501600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 44460809 - 44461095
Alignment:
| Q |
13 |
aatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatac |
112 |
Q |
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|||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
44460809 |
aatatatgatatcagtataattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttac |
44460908 |
T |
|
| Q |
113 |
atttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag------- |
205 |
Q |
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| T |
44460909 |
atttgtaatcctcttatgtttggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatca |
44461008 |
T |
|
| Q |
206 |
----tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaagg |
288 |
Q |
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| ||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |||||| ||| |||||||| |||||||| |
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| T |
44461009 |
ttactttgctgtaccatacactcattgttggatattgcaagctagagaaatttgatggtgctctcgagttattgactcagatgaagg |
44461095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 44468342 - 44468628
Alignment:
| Q |
13 |
aatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatac |
112 |
Q |
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|||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
44468342 |
aatatatgatatcagtataattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttac |
44468441 |
T |
|
| Q |
113 |
atttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag------- |
205 |
Q |
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|||||| ||||||||||||||||||| ||| |||||| ||| || ||||||| | |||||||||||| ||| ||||||| ||||||||||| |
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| T |
44468442 |
atttgtaatcctcttatgtttggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatca |
44468541 |
T |
|
| Q |
206 |
----tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaagg |
288 |
Q |
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| ||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |||||| ||| |||||||| |||||||| |
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| T |
44468542 |
ttactttgctgtaccatacactcattgttggatattgcaagctagagaaatttgatggtgctctcgagttattgactcagatgaagg |
44468628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 46359608 - 46359864
Alignment:
| Q |
13 |
aatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatac |
112 |
Q |
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|||||| | ||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
46359608 |
aatatacgatatcagtataattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggtttttac |
46359707 |
T |
|
| Q |
113 |
atttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag------- |
205 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||| || || ||||| | |||||||||||||| || ||||||| ||||||||||| |
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| T |
46359708 |
atttgtaatcctcttatgtttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagttaatca |
46359807 |
T |
|
| Q |
206 |
----tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatg |
258 |
Q |
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| ||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |
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| T |
46359808 |
ttactttgctgtaccatacactcattgttggatattgcaagctagagaaatttgatg |
46359864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 41583985 - 41584055
Alignment:
| Q |
206 |
tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattga |
276 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
41583985 |
tctgctgtaccatacgctcattgatggatattgcaggctacagaaatttgatgaggctctcaagttattga |
41584055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 38604576 - 38604490
Alignment:
| Q |
27 |
atataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtataca |
113 |
Q |
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|
|||||||||||| |||| |||||||||| |||||| ||||| || ||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
38604576 |
atataattattagtgcctgtgttaaagctagggaaaccggacgggctttggagatggtgttgctattggaaagtataggtttataca |
38604490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 40180053 - 40179993
Alignment:
| Q |
42 |
cctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtat |
102 |
Q |
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|||||||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
40180053 |
cctatgttgatgctagggaaatcggacaagctttggagatggtgatgctattggaaagtat |
40179993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 38604386 - 38604305
Alignment:
| Q |
206 |
tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaag |
287 |
Q |
| |
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||||||||||||| | ||||||| ||||||||||| |||||| || |||||| |||||||||| |||||||| ||||||| |
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| T |
38604386 |
tctgctgtaccattcactcattgttggatattgcaagctacataattttgataaggctctcaagttattgactcagatgaag |
38604305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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