View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_88 (Length: 315)
Name: NF1318_high_88
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_88 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 3587002 - 3586793
Alignment:
| Q |
28 |
atcataggcagcagctcgaaaagtactgaccttattagtggtgccggccctttcggtgaccatatacaagagaacccacaattttcactcacaatagaaa |
127 |
Q |
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| T |
3587002 |
atcatgggcagcagctcgaaaagtactgaccttattagtggtgccggccctttcggtgaccatttacaagagaacccacaattttcactcacaatagaaa |
3586903 |
T |
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| Q |
128 |
atgaataaaaatggagtaccaaaagtaccgcatataacctccatcttcacgctccagaagataacacttgaaatttgaacttgaaacttcaactacatgt |
227 |
Q |
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| T |
3586902 |
atgaataaaaatggagtaccaaaagtaccgtatataacctccatcttcacgctccagaagataacacttgaaatttgaacttgaaacttcaactacatgt |
3586803 |
T |
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| Q |
228 |
agtgaaactt |
237 |
Q |
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|||||||||| |
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| T |
3586802 |
agtgaaactt |
3586793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 3574547 - 3574501
Alignment:
| Q |
89 |
atatacaagagaacccacaattttcactcacaatagaaaatgaataa |
135 |
Q |
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| T |
3574547 |
atatacaagagaacccacgattttcactcacaataaaaaatgaataa |
3574501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 21979083 - 21979138
Alignment:
| Q |
103 |
ccacaattttcactcacaatagaa-aatgaataaaaatggagtaccaaaagtaccg |
157 |
Q |
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| T |
21979083 |
ccacattttccactcacaatagaataatgagcaaaaatggagtaccaaaagtaccg |
21979138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 28080420 - 28080376
Alignment:
| Q |
104 |
cacaattttcactcacaatagaa-aatgaataaaaatggagtacc |
147 |
Q |
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| T |
28080420 |
cacaattttcactcacaatagaataatgaacaaaaatgaagtacc |
28080376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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