View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_94 (Length: 304)
Name: NF1318_high_94
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_94 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 149 - 295
Target Start/End: Original strand, 42637080 - 42637218
Alignment:
| Q |
149 |
cagaatactgtaaatgagataagcaatgaaatcataataatcataagaaattaataaccacgttcatgataaaataaag-aaattaatgaatttcttctc |
247 |
Q |
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| T |
42637080 |
cagaatactgtaaatgagatatgcaatgaaatcataa---------gaaattaataaccacgttcatgataaaataaaataaattaatgaatttattctc |
42637170 |
T |
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| Q |
248 |
tttcaatcgacacaaggctttccttgtaagttattatctgagaataat |
295 |
Q |
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| T |
42637171 |
tttcaatcgacacaaggctttccttgtaagttattatctgagaataat |
42637218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 42636975 - 42637016
Alignment:
| Q |
44 |
atcagaaggtgtttctacatcaaactttaagttgttgacatg |
85 |
Q |
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| T |
42636975 |
atcagaaggtgtttctacatcaaactttaagttgttgacatg |
42637016 |
T |
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