View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_high_99 (Length: 284)
Name: NF1318_high_99
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_high_99 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 45938984 - 45938751
Alignment:
| Q |
30 |
cccttgacctaccaaaggctgatccaaaaccacttgaattccatgttccttaagatggttagcaggaccaataccacttagcatcaacaattgtggactt |
129 |
Q |
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| T |
45938984 |
cccttgacctaccaaaggctgatccaaaaccacttgaattccatgttccttaagatggttagcaggaccaatgccacttggcatcaacaattgtggactt |
45938885 |
T |
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| Q |
130 |
ccaattgcaccagctgatactattatttcattcttcactttggagcttatgtgttgctctatgtatgattcccaatgtatctttgaatatcactccatat |
229 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45938884 |
ccaatagcaccagctgatactattatttcattcttcactttggagcttatgtgttgctctttgtatgattcccaatgtatctttgaatatcactccatat |
45938785 |
T |
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| Q |
230 |
gcttgtggcctccctttttctgtaaaacaaattc |
263 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
45938784 |
gcttgtggcctccctttttctgtaaaacaaattc |
45938751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 30 - 253
Target Start/End: Complemental strand, 45945809 - 45945587
Alignment:
| Q |
30 |
cccttgacctaccaaaggctgatccaaaaccacttgaattccatgttccttaagatggttagcaggaccaataccacttagcatcaacaattgtggactt |
129 |
Q |
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||||||||| || ||||||||||||| |||||| || |||||| | ||||||||||||||||||||||||| ||||| ||||||| || ||||||||| |
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| T |
45945809 |
cccttgaccaacaaaaggctgatccataaccacctggattccaagcgccttaagatggttagcaggaccaatgccactcagcatcagtaactgtggactt |
45945710 |
T |
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| Q |
130 |
ccaattgcaccagctgatactattatttcattcttcactttggagcttatgtgttgctctatgtatgattcccaatgtatctttgaatatcactccatat |
229 |
Q |
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|||||||||||||||||||| ||||||||||| | |||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
45945709 |
ccaattgcaccagctgatacaattatttcattatccactttggagattatgt-atgctctatgtatgattcctaatgtatctttgaaaatcactccataa |
45945611 |
T |
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| Q |
230 |
gcttgtggcctccctttttctgta |
253 |
Q |
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|||||||||||||||||||||||| |
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| T |
45945610 |
gcttgtggcctccctttttctgta |
45945587 |
T |
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