View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_10 (Length: 659)

Name: NF1318_low_10
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_10
NF1318_low_10
[»] chr1 (1 HSPs)
chr1 (30-573)||(1503950-1504485)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 573
Target Start/End: Complemental strand, 1504485 - 1503950
Alignment:
Q  30 gatatggctctggccctaacccaagagttgt---gactcttgcatggttgtaggagtgggtaagaaaagggaaatagcattagttttcccatactttaga 126  Q
    |||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504485 gatatggctctggccctaacccaagagttgttgtgactcttgcatgattgtaggagtgggtaagaaaagggaaatagcattagttttcccatactttaga 1504386  T
Q  127 aaaagagaaattatacggtctcccttnnnnnnngaaatttta-----ctttctaatgtacgtacggaacggtgcagttttgttgaaaaacaatataaaca 221  Q
    ||| || |||||||||||||||||||       |||||| ||     |||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  1504385 aaa-gaaaaattatacggtctcccttaaaaaaagaaattatattatactttctaatgtacgtacggaacggtgcagtttagttgaaaaacaatataaacc 1504287  T
Q  222 tgtattttccagaaaggaaaagggaaagcaaagatagattaatgtttccaaaaattttatttctaaacagctcaatttttgttaagataaccatttaacc 321  Q
    |||||||||| |||||||||||      ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  1504286 tgtattttcctgaaaggaaaag------caaagatagattaatgtttccaaaaattttacttctgaacagctcaatttt-gttaagataaccatttaacc 1504194  T
Q  322 taataaaatcaaataattgagcttaaatggttaatgaactccaccatataataannnnnnnaggagaatcttgagtttgattcttgagtgaaatgaatat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||| ||||||||||| |||| |||||||||||||||||    
T  1504193 taataaaatcaaataattgagcttaaatggttaatgaactccaccatataacaaatttttcaggaaaatcttgagttcgatttttgagtgaaatgaatat 1504094  T
Q  422 acgaaccaagctaagcacgtcaacgctatttttgctnnnnnnnnnntagaatatacttttggaaacgacattgataattcatgaactgaattaaatcgag 521  Q
    |||||||||||      |||||||||||||||||||          ||||||||||||||| |||||||||||||||||||||| ||||||||||||||     
T  1504093 acgaaccaagcg-----cgtcaacgctatttttgctaaaagaaaaatagaatatacttttgaaaacgacattgataattcatgagctgaattaaatcga- 1504000  T
Q  522 ctgctgattcaactcaattccaaaatcattagtcacattcatttcaattcaa 573  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1503999 --gctgattcaactcaattccaaaatcattagtcacattcatttcaattcaa 1503950  T

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