View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_102 (Length: 309)
Name: NF1318_low_102
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_102 |
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| [»] chr3 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 309
Target Start/End: Complemental strand, 42551713 - 42551434
Alignment:
| Q |
30 |
gaaacatcactagctacaaccaaatcttgaaactcctcatcaacgtcagtagttccacgcatattaatcaattcttgtttggctttgtcattttgaccac |
129 |
Q |
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| T |
42551713 |
gaaacatcactagctacaaccaaatcttgaaactcctcatcaacgtcagtagttccacgcatattaatcaattcttgtttggctttgtcattttgaccac |
42551614 |
T |
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| Q |
130 |
gctcaatcaaagaactcggtgagtcgggaaggaacattgcacctaaggtaaacattattccagggatagaagcaaaactcaaactgtagcgccatccctc |
229 |
Q |
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| T |
42551613 |
gctcaatcaaagaactcggtgagtcgggaaggaacattgcacctaaggtaaacattattccagggatagaagcaaaactcaaactgtagcgccatccctc |
42551514 |
T |
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| Q |
230 |
cccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatagtgattgccaattgaaacatca |
309 |
Q |
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| T |
42551513 |
cccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatagtgattgccaattgaaacatca |
42551434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 42518521 - 42518621
Alignment:
| Q |
209 |
caaactgtagcgccatccctccccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatagtgattgccaattgaaacatc |
308 |
Q |
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| T |
42518521 |
caaactgtatcgccatccttccccgttcttcatctttgcaaaaaaataattgaggatgttggccacaaaaatgcctatagttattgccaattggaacatc |
42518620 |
T |
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| Q |
309 |
a |
309 |
Q |
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| T |
42518621 |
a |
42518621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 1240190 - 1240299
Alignment:
| Q |
200 |
agcaaaactcaaactgtagcgccatccctccccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatagtgattgccaat |
299 |
Q |
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| T |
1240190 |
agcaaatcccaaactgtaccgccatccttccccgttcttcatgtttgcaaaaaaataattgaggatgttggccacaaaaatgcctatagttattgacaat |
1240289 |
T |
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| Q |
300 |
tgaaacatca |
309 |
Q |
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| T |
1240290 |
tggaacatca |
1240299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 18234496 - 18234775
Alignment:
| Q |
30 |
gaaacatcactagctacaaccaaatcttgaaactcctcatcaacgtcagtagttccacgcatattaatcaattcttgtttggctttgtcattttgaccac |
129 |
Q |
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|||| |||||||||| |||||||||||||||||||||| || || || || |||||||| ||| | |||||||||| ||||||||| ||||||||||| | |
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| T |
18234496 |
gaaatatcactagctgcaaccaaatcttgaaactcctcgtccacatcggttgttccacggatacttatcaattcttttttggctttatcattttgaccgc |
18234595 |
T |
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| Q |
130 |
gctcaatcaaagaactcggtgagtcgggaaggaacattgcacctaaggtaaacattattccagggatagaagcaaaactcaaactgtagcgccatccctc |
229 |
Q |
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| T |
18234596 |
gctcgatcaaagaacttggcgtgtcgggaagaaagattgcacctgtgataatcattattgcagggacggcagccaaacccaaactgtaacgccatccttc |
18234695 |
T |
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| Q |
230 |
cccgttcttcattttcgcaaacatgaaattgaggatattagccacaaagatgcctatagtgattgccaattgaaacatca |
309 |
Q |
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| T |
18234696 |
accgtttttcattttagaaaacacatagttgagaatattggccacaaagatgcctattgtgattgccaattggaacatca |
18234775 |
T |
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