View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_103 (Length: 309)
Name: NF1318_low_103
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 2794357 - 2794625
Alignment:
| Q |
11 |
cagagattgatccagaaaattgtcgaaggcttgctgaagaggtgttgaaggttttgggtgaggctgatgaccgagaagtggagaagaggttgctggggta |
110 |
Q |
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| T |
2794357 |
cagagattgatccggaaaattgtcgaaggcttgctgaagaggtgttgaaggttttgggtgaggctgatgacagagaagtggagaagaggttgttggggta |
2794456 |
T |
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| Q |
111 |
ttttgatttgaataagtttagtcttgttaagtttctgatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagag |
210 |
Q |
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| T |
2794457 |
ttttgatttgaataagtttagtcttgttaagtttctaatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagag |
2794556 |
T |
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| Q |
211 |
agggataaaattgaggaagagatgaaggggtcgaatttggagtcaattttggaggagttatatgttgtg |
279 |
Q |
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| T |
2794557 |
agggataaaattgaggaagagatgaaggggtcgaatttggagtcaattttggaggagttatatgctgtg |
2794625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 29261933 - 29262049
Alignment:
| Q |
122 |
ataagtttagtcttgttaagtttctgatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagagagggataaaat |
221 |
Q |
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| T |
29261933 |
ataagtttagtcttattaagtttttgttgcgaaataggctgaaaattttgtggtgtactcgtttggcgagggcacaagatcaggaagagagagagacgat |
29262032 |
T |
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| Q |
222 |
tgaggaagagatgaagg |
238 |
Q |
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| T |
29262033 |
tgaggaagagatgaagg |
29262049 |
T |
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